Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 5.2e-71 270.8 122 100.0
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 4.4e-70 267.7 122 99.2
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 7.5e-62 240.4 121 88.4
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 1.0e-55 219.9 115 86.1
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.8e-55 219.2 121 83.5
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 3.1e-47 191.8 115 67.0
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 6.8e-47 190.7 109 70.6
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 2.0e-46 189.1 120 73.3
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 3.4e-46 188.3 124 66.1
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 5.8e-46 187.6 106 71.7
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 1.7e-45 186.0 116 67.2
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 2.2e-45 185.7 109 69.7
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.9e-45 185.3 117 64.1
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 4.9e-45 184.5 106 70.8
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 4.9e-45 184.5 121 62.0
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 8.3e-45 183.7 109 67.0
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 8.3e-45 183.7 117 63.2
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 1.1e-44 183.3 125 62.4
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 1.1e-44 183.3 117 63.2
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 1.1e-44 183.3 121 63.6
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 1.4e-44 183.0 109 67.0
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.4e-44 183.0 117 63.2
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 1.9e-44 182.6 116 64.7
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 1.9e-44 182.6 119 61.3
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 2.4e-44 182.2 116 64.7
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 4.1e-44 181.4 109 67.9
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 4.1e-44 181.4 117 64.1
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 5.4e-44 181.0 117 63.2
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 7.1e-44 180.6 106 67.9
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 7.1e-44 180.6 106 67.9
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 9.2e-44 180.3 116 64.7
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 1.6e-43 179.5 109 67.0
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 2.7e-43 178.7 117 62.4
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 3.5e-43 178.3 116 62.9
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 3.5e-43 178.3 109 66.1
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 4.6e-43 177.9 115 61.7
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 4.6e-43 177.9 105 66.7
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 6.0e-43 177.6 109 67.0
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 6.0e-43 177.6 103 69.9
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 1.0e-42 176.8 109 65.1
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.3e-42 176.4 125 60.0
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 1.3e-42 176.4 116 63.8
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 1.7e-42 176.0 116 61.2
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 2.3e-42 175.6 103 67.0
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 2.3e-42 175.6 106 65.1
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 2.3e-42 175.6 106 65.1
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 2.3e-42 175.6 112 67.0
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 2.3e-42 175.6 116 62.1
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 2.3e-42 175.6 107 64.5
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 3.9e-42 174.9 116 62.1
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 6.6e-42 174.1 103 66.0
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 6.6e-42 174.1 103 66.0
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 6.6e-42 174.1 113 61.9
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 64.2
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 64.2
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 64.2
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 64.2
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 64.2
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 65.1
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 1.1e-41 173.3 116 62.1
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 1.1e-41 173.3 106 65.1
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 1.5e-41 172.9 106 65.1
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 1.5e-41 172.9 103 66.0
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 1.9e-41 172.6 109 64.2
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 2.5e-41 172.2 109 63.3
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 3.3e-41 171.8 108 64.8
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 5.6e-41 171.0 109 61.5
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 9.5e-41 170.2 109 64.2
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 9.5e-41 170.2 119 58.0
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 1.6e-40 169.5 106 64.2
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 2.8e-40 168.7 117 60.7
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 2.8e-40 168.7 117 60.7
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 2.8e-40 168.7 106 63.2
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 3.6e-40 168.3 106 62.3
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 3.6e-40 168.3 117 60.7
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 4.7e-40 167.9 102 63.7
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 1.4e-39 166.4 106 61.3
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 3.1e-39 165.2 120 59.2
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 4.0e-39 164.9 103 60.2
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 4.0e-39 164.9 148 50.7
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 4.0e-39 164.9 116 56.9
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 8.9e-39 163.7 129 54.3
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 8.9e-39 163.7 157 47.8
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 2.0e-38 162.5 104 57.7
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 2.6e-38 162.2 116 57.8
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 4.4e-38 161.4 121 54.5
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 5.8e-38 161.0 125 54.4
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 9.9e-38 160.2 119 58.8
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 1.3e-37 159.8 95 66.3
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 2.2e-37 159.1 117 59.8
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 3.7e-37 158.3 106 58.5
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 4.1e-36 154.8 91 67.0
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 4.1e-36 154.8 107 58.9
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 1.6e-35 152.9 157 47.1
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 7.8e-35 150.6 109 56.0
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 6.6e-34 147.5 121 54.5
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 8.6e-34 147.1 137 48.2
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 1.6e-32 142.9 89 67.4
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 1.6e-32 142.9 109 56.9
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 8.1e-32 140.6 78 73.1
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 4.0e-31 138.3 90 65.6
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 6.8e-31 137.5 88 64.8
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 8.9e-31 137.1 78 69.2
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 1.5e-30 136.3 84 66.7
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 4.9e-29 131.3 59 98.3
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 2.1e-27 125.9 123 48.0
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 1.7e-26 122.9 90 60.0
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 3.3e-25 118.6 92 54.3
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 3.8e-21 105.1 82 54.9
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 1.1e-20 103.6 74 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 9.3e-20 100.5 93 43.0
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 1.6e-19 99.8 75 56.0
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 1.6e-19 99.8 65 64.6
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 1.6e-19 99.8 65 64.6
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 2.7e-19 99.0 77 54.5
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 3.9e-18 95.1 75 52.0
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 3.3e-17 92.0 72 54.2
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.8e-16 88.2 62 56.5
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 6.9e-15 84.3 76 48.7
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 1.1e-07 60.5 35 68.6


User provided reference genes

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