Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 2.4e-58 228.8 129 100.0
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 2.4e-58 228.8 129 100.0
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 7.9e-54 213.8 129 92.2
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.1e-50 201.4 129 86.0
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 86.0
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 86.0
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.6e-49 199.5 129 86.0
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.5e-49 198.4 129 85.3
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 85.3
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 2.9e-48 195.3 130 84.6
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 83.7
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 3.8e-48 194.9 129 84.5
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 3.8e-48 194.9 129 83.7
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 3.8e-48 194.9 129 84.5
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 3.8e-48 194.9 129 83.7
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 5.0e-48 194.5 129 85.3
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 6.5e-48 194.1 129 85.3
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.5e-47 193.0 129 83.7
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.9e-47 192.6 129 82.9
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 82.2
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 81.4
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 9.4e-47 190.3 127 82.7
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.1e-46 189.1 128 81.2
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.7e-46 188.7 129 81.4
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 3.6e-46 188.3 129 80.6
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 3.6e-46 188.3 129 80.6
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.7e-46 188.0 130 82.3
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 4.7e-46 188.0 130 82.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 4.7e-46 188.0 129 81.4
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 8.0e-46 187.2 129 82.9
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 8.0e-46 187.2 127 81.1
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 82.9
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.0e-45 186.8 132 81.8
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 3.0e-45 185.3 129 79.8
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 80.6
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 6.7e-45 184.1 129 81.4
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 8.8e-45 183.7 129 79.8
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 8.8e-45 183.7 131 79.4
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.2e-44 183.3 133 79.7
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.5e-44 183.0 133 80.5
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.5e-44 183.0 128 80.5
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.5e-44 183.0 132 81.1
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 2.0e-44 182.6 133 78.9
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 3.3e-44 181.8 129 78.3
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 3.3e-44 181.8 129 78.3
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 5.7e-44 181.0 132 80.3
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 5.7e-44 181.0 133 77.4
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 7.5e-44 180.6 129 79.1
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 7.5e-44 180.6 129 78.3
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 7.5e-44 180.6 132 80.3
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 9.7e-44 180.3 127 78.0
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.3e-43 179.9 129 80.6
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 1.3e-43 179.9 129 79.1
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.3e-43 179.9 150 70.7
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 1.3e-43 179.9 126 77.0
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.7e-43 179.5 132 79.5
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 2.2e-43 179.1 132 79.5
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.2e-43 179.1 131 80.2
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.7e-43 178.3 129 78.3
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 6.3e-43 177.6 116 85.3
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.1e-42 176.8 127 75.6
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.1e-42 176.8 130 77.7
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.8e-42 176.0 129 77.5
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.8e-42 176.0 116 85.3
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 2.4e-42 175.6 129 77.5
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 4.1e-42 174.9 132 77.3
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 9.1e-42 173.7 117 82.1
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.7e-41 172.2 128 79.7
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 2.7e-41 172.2 116 82.8
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 5.9e-41 171.0 129 76.7
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 5.9e-41 171.0 128 75.0
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.0e-40 170.2 130 76.9
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.0e-40 170.2 116 81.9
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.3e-40 169.9 116 80.2
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 2.2e-40 169.1 121 79.3
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 2.9e-40 168.7 129 76.0
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 3.8e-40 168.3 122 77.9
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.8e-40 168.3 161 63.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 5.0e-40 167.9 120 79.2
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.1e-39 166.8 114 81.6
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.5e-39 166.4 122 77.0
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.5e-39 166.4 119 81.5
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 2.5e-39 165.6 121 76.9
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 2.5e-39 165.6 129 74.4
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 5.5e-39 164.5 126 75.4
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 7.2e-39 164.1 129 75.2
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 7.2e-39 164.1 130 76.2
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 9.4e-39 163.7 116 79.3
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 9.4e-39 163.7 129 72.9
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.6e-38 162.9 128 72.7
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 2.1e-38 162.5 112 81.2
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 2.1e-38 162.5 129 77.5
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 3.6e-38 161.8 126 72.2
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 8.0e-38 160.6 128 76.6
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.0e-37 160.2 116 76.7
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.4e-37 159.8 117 78.6
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.8e-37 159.5 133 72.9
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.5e-36 156.4 129 72.9
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 4.4e-36 154.8 116 76.7
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 4.4e-36 154.8 132 72.7
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.2e-35 152.5 130 73.1
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.8e-35 152.1 131 72.5
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.8e-35 152.1 131 72.5
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.4e-34 149.8 152 62.5
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.9e-33 144.4 112 73.2
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.3e-32 143.3 132 68.9
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.3e-32 143.3 132 68.9
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 3.8e-32 141.7 114 72.8
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 8.6e-32 140.6 116 73.3
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 8.6e-32 140.6 128 70.3
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.1e-31 140.2 132 67.4
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.5e-31 139.0 110 71.8
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.6e-30 136.3 95 81.1
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 8.0e-30 134.0 119 70.6
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 8.0e-30 134.0 142 60.6
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.4e-29 133.3 132 65.2
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 8.8e-29 130.6 131 63.4
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 8.3e-27 124.0 97 74.2
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 3.1e-26 122.1 94 71.3
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 3.1e-26 122.1 134 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 4.5e-25 118.2 80 78.8
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 1.3e-24 116.7 82 79.3
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.9e-24 115.5 83 77.1
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 5.0e-24 114.8 125 57.6
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.2e-22 110.2 136 55.9
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 2.1e-22 109.4 270 36.7
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 2.8e-22 109.0 129 53.5
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 3.6e-22 108.6 68 88.2
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.8e-21 106.3 66 86.4
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.4e-20 102.1 68 80.9
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 2.4e-18 95.9 83 61.4
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 2.4e-18 95.9 68 77.9
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.2e-18 95.5 60 88.3
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 5.4e-18 94.7 120 49.2
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 2.0e-17 92.8 60 83.3
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 8.6e-16 87.4 59 81.4
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 2.5e-15 85.9 64 76.6
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.6e-14 83.2 54 85.2
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 6.2e-14 81.3 87 51.7
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 8.0e-14 80.9 61 70.5
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 6.4e-11 71.2 75 62.7
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 9.2e-10 67.4 113 42.5
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.7e-08 63.2 48 77.1


User provided reference genes

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