Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 3.7e-132 474.9 247 100.0
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 3.3e-125 451.8 247 95.5
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 2.3e-118 429.1 247 91.9
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 1.5e-109 399.8 247 84.6
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 4.8e-108 394.8 245 83.7
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 9.7e-101 370.5 244 80.7
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.5e-80 302.8 246 69.9
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 4.9e-68 261.9 244 59.4
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 8.3e-68 261.2 244 59.4
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 3.4e-61 239.2 242 57.0
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.4e-59 233.8 245 56.7
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 7.8e-58 228.0 221 57.0
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 4.3e-56 222.2 245 53.9
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 4.3e-56 222.2 246 54.1
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 9.5e-56 221.1 247 54.3
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 9.5e-56 221.1 245 54.7
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 2.8e-55 219.5 230 54.3
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 2.8e-55 219.5 244 53.7
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 4.0e-54 215.7 218 57.3
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 3.4e-53 212.6 244 54.9
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 4.6e-50 202.2 244 51.6
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 6.0e-50 201.8 244 52.0
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 7.8e-50 201.4 244 51.6
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 1.0e-49 201.1 222 53.2
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 2.5e-48 196.4 239 49.0
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 3.3e-48 196.1 247 50.6
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 3.3e-48 196.1 236 49.2
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 7.3e-48 194.9 244 51.2
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 1.2e-47 194.1 221 51.6
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 6.2e-47 191.8 246 48.8
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 6.2e-47 191.8 243 50.6
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 6.2e-47 191.8 207 54.1
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 6.2e-47 191.8 207 54.1
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 8.1e-47 191.4 244 53.3
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 1.1e-46 191.0 248 50.4
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 1.1e-46 191.0 247 47.8
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 1.8e-46 190.3 244 52.9
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 5.2e-46 188.7 202 54.0
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 5.2e-46 188.7 202 54.0
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 8.9e-46 188.0 216 52.8
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.2e-45 187.6 242 51.7
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.4e-45 185.7 243 47.3
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.3e-44 184.1 210 53.3
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 3.8e-44 182.6 244 48.4
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 6.4e-44 181.8 249 47.0
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 8.4e-44 181.4 243 46.9
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.9e-43 180.3 244 48.0
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.9e-43 180.3 248 46.4
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 7.8e-42 174.9 241 47.3
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 2.3e-41 173.3 244 47.1
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 8.7e-41 171.4 250 46.0
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.1e-40 171.0 224 48.7
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.3e-40 169.1 246 45.1
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 3.6e-39 166.0 249 44.6
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 1.4e-38 164.1 216 47.7
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 1.4e-38 164.1 244 45.5
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 1.8e-38 163.7 243 44.9
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.8e-38 163.7 204 50.0
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 9.0e-38 161.4 243 46.5
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.5e-37 160.6 221 45.7
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 2.0e-37 160.2 242 43.0
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 2.6e-37 159.8 216 47.2
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 2.6e-37 159.8 202 51.0
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.4e-37 159.1 246 43.5
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 5.8e-37 158.7 246 43.9
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.6e-37 158.3 246 43.5
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 4.9e-36 155.6 222 44.1
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.1e-35 154.5 242 45.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 2.4e-35 153.3 210 49.0
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 2.4e-35 153.3 201 48.8
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 4.2e-35 152.5 204 45.6
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 5.4e-35 152.1 214 45.8
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 5.4e-35 152.1 206 47.6
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 7.1e-35 151.8 217 45.6
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 2.7e-34 149.8 202 49.0
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 3.9e-33 146.0 205 45.4
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 5.1e-33 145.6 217 46.5
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.5e-32 143.3 212 46.2
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.6e-32 142.1 244 44.3
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 2.1e-31 140.2 249 43.8
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 3.1e-30 136.3 226 44.2
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 3.1e-30 136.3 260 39.2
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 4.0e-30 136.0 246 40.7
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 5.8e-29 132.1 228 42.1
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 7.6e-29 131.7 243 40.3
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 8.4e-28 128.3 133 51.1
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 1.1e-27 127.9 212 44.8
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-27 127.9 255 38.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 1.6e-26 124.0 201 39.3
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 6.0e-26 122.1 262 38.9
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 3.9e-25 119.4 200 44.5
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 8.7e-25 118.2 206 38.3
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.5e-24 116.7 167 44.9
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.5e-24 116.7 199 38.2
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 1.3e-23 114.4 127 54.3
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 1.1e-22 111.3 259 37.5
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.1e-22 111.3 201 41.3
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.8e-22 110.5 220 38.2
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 1.2e-21 107.8 261 37.9
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 1.2e-21 107.8 261 37.9
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 1.3e-20 104.4 260 37.3
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 1.3e-20 104.4 260 37.3
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 1.3e-20 104.4 201 39.3
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 2.9e-20 103.2 260 36.9
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 2.9e-20 103.2 260 36.9
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 3.8e-20 102.8 261 36.8
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 1.4e-19 100.9 261 35.2
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 9.3e-19 98.2 203 35.5
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 1.6e-18 97.4 106 56.6
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 1.3e-17 94.4 280 33.2
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.1e-16 91.3 190 39.5
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.9e-16 90.5 265 32.8
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 4.3e-16 89.4 216 34.7
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 4.8e-15 85.9 239 32.2
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 5.3e-14 82.4 224 34.4
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 5.3e-14 82.4 226 34.5
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 9.0e-14 81.6 173 39.9
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 2.0e-13 80.5 253 32.8
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 6.5e-12 75.5 207 33.8
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 4.2e-11 72.8 185 34.6
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 4.6e-10 69.3 111 44.1
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 1.0e-09 68.2 231 29.4
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 5.1e-09 65.9 136 36.8
ECA246G0388 Erigeron canadensis HOM05D001755 ORTHO05D001665 5.1e-09 65.9 295 24.4
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 9.7e-08 61.6 244 25.0
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 3.7e-07 59.7 206 24.3
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 6.3e-07 58.9 76 42.1
HanXRQChr05g0163561 Helianthus annuus HOM05D001755 ORTHO05D001665 1.4e-06 57.8 223 24.7
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 3.1e-06 56.6 148 33.1
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 6.9e-06 55.5 51 49.0


User provided reference genes

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