Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 9.9e-124 446.8 229 100.0
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 2.4e-122 442.2 229 97.8
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 4.6e-121 438.0 229 96.5
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 6.0e-121 437.6 229 97.8
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.0e-120 436.8 229 97.4
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.9e-114 416.0 229 91.3
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 3.9e-112 408.3 230 90.0
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 1.8e-104 382.9 230 82.6
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 8.7e-104 380.6 231 83.5
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 7.4e-103 377.5 231 83.1
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 1.3e-102 376.7 230 83.0
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 6.2e-102 374.4 230 81.3
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 1.1e-101 373.6 229 83.4
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 1.8e-101 372.9 230 81.3
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 5.3e-101 371.3 229 79.9
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 2.9e-99 365.5 232 79.3
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 3.8e-99 365.2 231 81.0
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 5.1e-96 354.8 229 78.6
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 2.8e-94 349.0 229 79.0
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 6.3e-94 347.8 229 79.0
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 1.4e-93 346.7 229 78.2
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 5.3e-93 344.7 229 77.3
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 6.9e-93 344.4 229 75.5
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.2e-92 343.6 230 76.5
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 7.7e-92 340.9 229 77.7
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.0e-91 340.5 230 78.7
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 1.7e-91 339.7 229 78.2
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 1.7e-91 339.7 229 76.0
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 1.7e-91 339.7 229 75.5
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.2e-91 339.3 230 77.8
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 2.2e-91 339.3 231 75.3
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 2.9e-91 339.0 233 76.4
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 2.9e-91 339.0 224 79.0
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 3.8e-91 338.6 229 75.1
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 5.0e-91 338.2 231 77.5
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 5.0e-91 338.2 229 76.4
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 74.2
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 76.4
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 74.7
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 76.9
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 8.5e-91 337.4 231 76.2
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 75.1
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 75.1
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 8.5e-91 337.4 230 77.8
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 1.1e-90 337.0 233 75.1
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 1.4e-90 336.7 231 76.2
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-90 336.7 229 76.0
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 1.4e-90 336.7 229 76.0
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.9e-90 336.3 230 77.0
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 1.9e-90 336.3 234 76.1
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 3.2e-90 335.5 229 74.7
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 3.2e-90 335.5 230 75.2
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 3.2e-90 335.5 230 75.7
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 7.2e-90 334.3 234 76.5
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 9.4e-90 334.0 230 74.3
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.6e-89 333.2 230 76.5
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.6e-89 333.2 230 76.5
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 2.1e-89 332.8 230 76.1
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 3.6e-89 332.0 230 74.3
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 7.9e-89 330.9 232 72.4
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.4e-88 330.1 229 76.9
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 1.4e-88 330.1 230 75.7
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 1.8e-88 329.7 230 73.0
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 3.9e-88 328.6 229 73.4
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.9e-88 328.6 226 77.0
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 3.9e-88 328.6 232 74.1
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 5.1e-88 328.2 236 74.6
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.7e-88 327.8 225 76.0
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 6.7e-88 327.8 230 75.2
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 6.7e-88 327.8 226 77.0
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 1.1e-87 327.0 226 77.4
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 2.5e-87 325.9 232 73.3
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.3e-87 325.5 226 75.7
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 3.3e-87 325.5 230 76.5
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.3e-87 325.5 227 76.2
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 4.3e-87 325.1 229 75.1
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 7.4e-87 324.3 229 74.2
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 7.4e-87 324.3 231 74.9
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.3e-86 323.6 229 74.7
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 1.3e-86 323.6 229 74.2
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 2.2e-86 322.8 231 73.6
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 2.2e-86 322.8 229 74.2
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 2.8e-86 322.4 229 73.8
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 3.7e-86 322.0 232 72.4
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 4.8e-86 321.6 230 74.3
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 74.2
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 74.2
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 74.2
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 74.2
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 4.8e-86 321.6 236 73.3
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 8.2e-86 320.9 231 73.2
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 1.1e-85 320.5 229 71.6
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 1.4e-85 320.1 229 73.8
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 72.5
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 72.5
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 73.8
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 236 73.3
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 2.4e-85 319.3 234 72.2
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 2.4e-85 319.3 229 73.4
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 3.1e-85 318.9 229 73.4
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 6.9e-85 317.8 180 86.1
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 6.9e-85 317.8 224 74.1
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 9.1e-85 317.4 229 72.9
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 1.2e-84 317.0 229 72.9
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 4.5e-84 315.1 234 72.2
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.0e-83 313.9 226 74.3
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 1.3e-83 313.5 229 72.1
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 1.3e-83 313.5 229 72.1
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 2.9e-83 312.4 218 76.1
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.1e-82 310.5 236 69.5
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 4.2e-82 308.5 179 83.8
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 2.7e-81 305.8 229 69.9
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 6.7e-80 301.2 229 69.9
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 6.7e-80 301.2 229 69.9
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 2.2e-78 296.2 230 68.7
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 4.8e-78 295.0 224 69.6
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 1.8e-77 293.1 156 88.5
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 5.3e-77 291.6 220 68.2
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 3.5e-76 288.9 204 75.0
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.0e-75 287.3 231 66.7
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.2e-75 286.2 227 68.7
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 3.2e-74 282.3 216 68.1
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 3.9e-72 275.4 194 71.6
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 4.7e-65 251.9 174 69.5
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.6e-63 246.1 203 62.6
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.4e-63 245.4 219 60.3
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.7e-62 242.3 227 56.4
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 2.4e-61 239.6 232 55.2
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.1e-61 238.8 225 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 9.4e-58 227.6 213 57.7
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 2.7e-57 226.1 204 58.3
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.6e-52 210.3 144 78.5
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 7.2e-50 201.4 126 92.9
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 7.5e-47 191.4 150 59.3
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 4.9e-46 188.7 177 54.8
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.0e-40 169.1 152 65.8
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.7e-38 162.5 127 74.0
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 9.2e-37 157.9 175 49.1
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 6.4e-30 135.2 77 72.7
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 3.3e-26 122.9 109 69.7
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 8.3e-22 108.2 57 82.5
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 2.4e-21 106.7 141 48.9
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 6.2e-09 65.5 44 72.7


User provided reference genes

Program Settings