Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 2.8e-126 455.3 229 100.0
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 1.9e-122 442.6 229 97.8
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.1e-121 439.1 229 96.5
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 2.7e-121 438.7 229 96.5
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.5e-121 438.3 229 96.9
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 1.1e-114 416.8 229 91.3
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 6.0e-113 411.0 230 90.4
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 6.0e-105 384.4 231 84.0
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 1.8e-104 382.9 230 82.6
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 3.0e-104 382.1 229 83.8
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 2.1e-102 375.9 231 82.7
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 2.1e-102 375.9 229 81.7
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 2.1e-102 375.9 230 82.2
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 3.1e-101 372.1 229 79.9
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 4.0e-101 371.7 229 82.1
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.6e-100 369.0 230 80.9
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.3e-99 366.7 232 79.3
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 1.0e-96 357.1 230 80.4
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 1.5e-95 353.2 229 79.5
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 1.1e-93 347.1 229 78.2
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 2.4e-93 345.9 229 77.3
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 5.3e-93 344.7 232 76.3
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 9.0e-93 344.0 229 75.1
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 9.0e-93 344.0 229 77.3
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 9.0e-93 344.0 230 79.6
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.2e-92 343.6 229 78.6
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.5e-92 343.2 229 76.4
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 3.4e-92 342.0 229 76.0
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 1.3e-91 340.1 230 77.8
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.3e-91 340.1 229 76.0
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.3e-91 340.1 229 76.0
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 1.3e-91 340.1 229 76.0
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 1.7e-91 339.7 229 77.7
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 1.7e-91 339.7 233 75.1
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 2.2e-91 339.3 229 76.4
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 2.2e-91 339.3 233 76.4
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 2.9e-91 339.0 231 77.5
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 2.9e-91 339.0 229 74.2
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.9e-91 339.0 229 76.4
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 3.8e-91 338.6 229 76.4
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 3.8e-91 338.6 229 74.7
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 5.0e-91 338.2 230 78.3
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 75.1
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 75.1
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 76.0
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 6.5e-91 337.8 229 74.7
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 6.5e-91 337.8 224 78.6
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 8.5e-91 337.4 232 76.7
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 76.0
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 1.4e-90 336.7 232 76.7
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 1.9e-90 336.3 229 75.1
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 2.5e-90 335.9 229 74.7
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 4.2e-90 335.1 232 74.1
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 4.2e-90 335.1 229 75.1
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 5.5e-90 334.7 234 76.5
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 5.5e-90 334.7 231 74.0
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 9.4e-90 334.0 234 75.2
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 1.6e-89 333.2 230 76.1
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 4.6e-89 331.6 230 74.3
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 4.6e-89 331.6 229 75.5
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.1e-89 331.3 226 77.4
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 6.1e-89 331.3 232 72.8
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 7.9e-89 330.9 232 72.8
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 7.9e-89 330.9 230 75.7
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 1.0e-88 330.5 233 72.1
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.4e-88 330.1 229 76.9
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 2.3e-88 329.3 229 73.4
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 6.7e-88 327.8 229 75.5
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 6.7e-88 327.8 233 75.5
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 1.1e-87 327.0 236 73.3
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 1.5e-87 326.6 232 73.3
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 2.5e-87 325.9 226 75.7
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 3.3e-87 325.5 231 74.0
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 4.3e-87 325.1 229 75.5
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 4.3e-87 325.1 226 76.1
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 5.7e-87 324.7 229 74.2
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 7.4e-87 324.3 229 74.7
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 7.4e-87 324.3 225 75.1
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 7.4e-87 324.3 227 74.9
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 1.3e-86 323.6 229 73.8
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 1.3e-86 323.6 229 73.8
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.7e-86 322.0 226 74.8
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 3.7e-86 322.0 236 73.3
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 3.7e-86 322.0 229 74.2
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 4.8e-86 321.6 232 72.4
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 4.8e-86 321.6 230 74.8
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 4.8e-86 321.6 231 73.2
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 6.3e-86 321.2 229 73.8
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 6.3e-86 321.2 229 73.8
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 6.3e-86 321.2 229 73.8
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 6.3e-86 321.2 229 73.8
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 1.1e-85 320.5 229 73.4
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.4e-85 320.1 236 73.3
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.8e-85 319.7 233 71.2
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 72.9
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 73.4
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 72.9
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.8e-85 319.7 229 74.2
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 2.4e-85 319.3 229 73.8
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 3.1e-85 318.9 229 73.8
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 4.1e-85 318.5 229 72.5
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 9.1e-85 317.4 180 86.1
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 9.1e-85 317.4 224 74.1
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 1.2e-84 317.0 229 70.3
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 4.5e-84 315.1 229 72.9
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 4.5e-84 315.1 229 72.9
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 5.9e-84 314.7 234 72.2
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.9e-84 314.7 226 73.5
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.7e-83 313.2 237 70.0
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 3.8e-83 312.0 217 74.2
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 4.2e-82 308.5 179 83.8
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 9.4e-82 307.4 229 70.7
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 5.1e-80 301.6 229 69.0
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 5.1e-80 301.6 229 69.0
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 9.7e-79 297.4 230 69.6
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 3.7e-78 295.4 181 77.9
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 1.8e-77 293.1 156 88.5
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 2.4e-77 292.7 203 75.4
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 7.0e-77 291.2 220 67.3
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 2.2e-75 286.2 231 65.4
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 2.9e-75 285.8 187 76.5
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 5.0e-75 285.0 227 68.3
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 3.9e-72 275.4 199 70.9
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 6.1e-65 251.5 174 69.5
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 9.7e-63 244.2 219 60.3
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 3.7e-62 242.3 220 57.3
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 4.8e-62 241.9 231 56.3
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 3.1e-61 239.2 235 54.9
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 7.0e-61 238.0 225 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 1.2e-57 227.3 201 56.7
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 1.2e-57 227.3 217 56.7
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 2.0e-52 209.9 144 78.5
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.6e-49 199.1 126 91.3
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 8.3e-46 188.0 213 50.2
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 2.0e-44 183.3 226 44.2
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.4e-39 165.6 152 64.5
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 8.3e-38 161.4 127 71.7
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 3.5e-36 156.0 189 47.1
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 6.4e-30 135.2 77 72.7
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 7.3e-26 121.7 109 67.0
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 8.3e-22 108.2 57 82.5
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 1.9e-21 107.1 141 49.6
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 6.2e-09 65.5 44 72.7


User provided reference genes

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