Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 3.0e-210 734.9 380 100.0
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 1.7e-205 719.2 380 97.6
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 3.0e-186 655.2 378 86.5
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 2.2e-120 436.4 386 60.1
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 3.1e-114 416.0 389 58.6
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 6.9e-114 414.8 386 58.0
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 2.5e-111 406.4 372 58.9
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 6.1e-70 268.9 316 51.3
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 5.2e-37 159.5 243 37.9
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 5.2e-37 159.5 250 39.6
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 2.4e-34 150.6 250 37.6
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.1e-34 149.1 483 30.8
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.1e-33 147.5 312 34.6
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.1e-33 147.5 240 41.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.3e-32 144.8 234 40.2
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.5e-31 140.6 229 38.4
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 5.6e-31 139.4 380 31.8
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 2.1e-30 137.5 280 35.7
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 2.8e-30 137.1 290 34.5
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 2.8e-30 137.1 277 37.2
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 4.8e-30 136.3 215 36.3
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 8.1e-30 135.6 216 39.8
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 1.4e-29 134.8 282 37.6
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 3.1e-29 133.7 263 33.8
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.0e-29 133.3 271 37.6
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 9.0e-29 132.1 261 35.2
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 1.5e-28 131.3 435 28.5
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.5e-28 131.3 142 45.8
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 2.0e-28 131.0 258 37.2
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 2.0e-28 131.0 176 42.6
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.0e-28 131.0 218 37.2
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 3.4e-28 130.2 436 26.8
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 4.4e-28 129.8 263 37.6
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 4.4e-28 129.8 264 35.2
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 1.3e-27 128.3 176 42.6
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.9e-27 127.1 230 35.7
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 6.4e-27 125.9 468 27.4
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 2.4e-26 124.0 300 31.0
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.2e-26 123.2 272 34.9
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 4.2e-26 123.2 154 44.8
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 7.1e-26 122.5 213 37.1
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 7.1e-26 122.5 436 27.5
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 9.3e-26 122.1 323 28.2
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.2e-25 121.7 446 27.1
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.6e-25 121.3 289 32.2
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.1e-25 120.9 271 34.7
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.1e-25 120.9 307 32.2
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.1e-25 120.9 207 37.7
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 2.1e-25 120.9 215 35.3
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.7e-25 120.6 369 29.3
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 3.5e-25 120.2 270 34.4
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 7.8e-25 119.0 375 27.7
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 7.8e-25 119.0 293 31.7
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 1.3e-24 118.2 180 38.9
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.3e-24 118.2 258 32.6
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.7e-24 117.9 434 26.5
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.7e-24 117.9 288 34.7
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 5.1e-24 116.3 436 27.1
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 5.1e-24 116.3 260 33.5
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 6.6e-24 115.9 368 25.3
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.6e-24 115.9 260 33.8
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.5e-23 114.8 296 30.4
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.5e-23 114.8 439 28.5
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 1.9e-23 114.4 431 26.5
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 1.9e-23 114.4 283 29.3
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 4.3e-23 113.2 294 31.3
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 5.6e-23 112.8 441 27.4
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 7.3e-23 112.5 290 29.3
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 9.6e-23 112.1 299 26.4
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 3.6e-22 110.2 280 32.1
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 4.8e-22 109.8 258 33.7
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 6.2e-22 109.4 176 40.9
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 8.1e-22 109.0 243 30.5
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.1e-21 108.6 273 31.9
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 1.8e-21 107.8 232 29.7
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.8e-21 107.8 136 42.6
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 2.4e-21 107.5 244 34.0
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 4.0e-21 106.7 382 28.8
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 4.0e-21 106.7 187 34.8
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 9.0e-21 105.5 272 27.2
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 7.6e-20 102.4 131 42.7
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 7.6e-20 102.4 141 40.4
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 7.6e-20 102.4 141 40.4
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 7.6e-20 102.4 284 28.5
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 9.9e-20 102.1 405 24.4
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.3e-19 101.7 269 30.5
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 2.2e-19 100.9 295 27.8
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 2.9e-19 100.5 443 26.2
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.8e-19 100.1 137 39.4
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 6.4e-19 99.4 278 28.8
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 6.4e-19 99.4 214 31.8
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 1.1e-18 98.6 141 39.0
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 3.2e-18 97.1 146 39.7
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 4.2e-18 96.7 128 37.5
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 4.2e-18 96.7 282 27.7
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 7.1e-18 95.9 316 28.5
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.1e-17 94.4 316 25.9
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 2.7e-17 94.0 181 34.8
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 3.5e-17 93.6 181 33.7
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 3.5e-17 93.6 199 32.2
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 4.6e-17 93.2 268 28.7
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 6.0e-17 92.8 215 33.0
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 7.9e-17 92.4 242 28.9
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 1.0e-16 92.0 412 24.8
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 2.3e-16 90.9 243 28.4
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 8.7e-16 89.0 238 27.7
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 2.5e-15 87.4 162 33.3
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 2.1e-14 84.3 131 38.2
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 2.8e-14 84.0 145 33.8
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.1e-13 82.0 236 26.3
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.4e-13 81.6 259 27.8
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 2.4e-13 80.9 129 34.9
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 2.4e-13 80.9 326 24.8
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 2.4e-13 80.9 142 38.0
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 4.0e-13 80.1 127 34.6
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 5.3e-13 79.7 240 25.0
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 9.0e-13 79.0 171 32.7
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.5e-12 78.2 256 23.8
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.0e-12 77.8 128 45.3
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 3.4e-12 77.0 250 28.8
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 4.5e-12 76.6 180 30.0
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 5.8e-12 76.3 134 35.8
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 5.8e-12 76.3 141 31.2
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.9e-11 73.9 173 32.4
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.8e-11 73.6 173 31.8
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.8e-11 73.6 173 31.8
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.8e-11 73.6 188 28.7
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 4.9e-11 73.2 173 31.8
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 6.5e-11 72.8 191 28.8
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 1.9e-10 71.2 189 32.8
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.9e-10 71.2 250 24.8
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 1.9e-10 71.2 244 23.0
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 2.5e-10 70.9 156 31.4
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 2.7e-09 67.4 88 44.3
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.5e-09 67.0 127 33.9
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 4.6e-09 66.6 149 27.5
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 6.0e-09 66.2 166 28.3
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 7.9e-09 65.9 182 28.0
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 7.9e-09 65.9 166 27.1
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 1.0e-08 65.5 270 23.7
CARHR274940 Cardamine hirsuta HOM05D001456 ORTHO05D014991 1.0e-08 65.5 217 26.3
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 1.3e-08 65.1 74 45.9
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 1.3e-08 65.1 155 28.4
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 2.3e-08 64.3 275 22.5
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 3.0e-08 63.9 59 50.8
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.0e-08 63.9 227 26.9
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 3.9e-08 63.5 275 22.5
ECA232G0957 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.9e-08 63.5 238 28.2
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 5.1e-08 63.2 239 23.8
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.1e-08 63.2 166 28.9
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 6.7e-08 62.8 227 26.4
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 8.7e-08 62.4 262 21.4
BcaB06g27961 Brassica carinata HOM05D012895 ORTHO05D014428 1.9e-07 61.2 141 27.7
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 2.5e-07 60.8 253 26.9
Thhalv10000536m.g Eutrema salsugineum HOM05D012895 ORTHO05D014428 3.3e-07 60.5 151 27.2
Potri.001G283000 Populus trichocarpa HOM05D000650 ORTHO05D007302 3.3e-07 60.5 238 23.1
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 5.7e-07 59.7 172 27.9
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 1.3e-06 58.5 188 25.5
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.3e-06 58.5 164 27.4
BcaC02g08512 Brassica carinata HOM05D012895 ORTHO05D014428 1.6e-06 58.2 132 30.3
BolC4t26912H Brassica oleracea HOM05D012895 ORTHO05D014428 1.6e-06 58.2 132 30.3
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.6e-06 58.2 233 24.0
Peaxi162Scf00003g03237 Petunia axillaris HOM05D021013 ORTHO05D007302 1.6e-06 58.2 242 25.2
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 2.8e-06 57.4 209 25.8
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.8e-06 57.4 172 26.7
AT2G24030 Arabidopsis thaliana HOM05D012895 ORTHO05D014428 3.7e-06 57.0 155 28.4
C04p53570 Brassica napus HOM05D012895 ORTHO05D014428 3.7e-06 57.0 132 30.3
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 6.2e-06 56.2 233 23.6
QL11p025811 Quercus lobata HOM05D000650 ORTHO05D007302 6.2e-06 56.2 136 27.2
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 8.2e-06 55.8 235 23.0


User provided reference genes

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