Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 9.1e-34 146.4 75 100.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.2e-23 111.3 61 93.4
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 3.2e-23 111.3 61 93.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-20 102.4 61 85.2
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.5e-20 102.4 61 85.2
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 5.7e-20 100.5 61 83.6
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.8e-18 95.5 62 80.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 1.7e-16 89.0 61 75.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.1e-15 86.3 61 68.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 2.5e-15 85.1 61 70.5
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 3.2e-15 84.7 61 70.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.2e-15 84.3 61 67.2
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 7.2e-15 83.6 61 70.5
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.2e-15 83.6 61 68.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 9.4e-15 83.2 59 69.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.6e-14 82.4 61 68.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.1e-14 82.0 61 65.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.0e-13 79.7 61 67.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.0e-13 79.7 61 68.9
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.0e-13 79.7 57 71.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.8e-13 79.0 61 72.1
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-13 78.6 62 71.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 4.0e-13 77.8 61 68.9
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 4.0e-13 77.8 61 67.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.2e-13 77.4 61 63.9
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 5.2e-13 77.4 61 67.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 5.2e-13 77.4 64 70.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.2e-13 77.4 62 71.0
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 5.2e-13 77.4 67 68.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 5.2e-13 77.4 61 70.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.8e-13 77.0 61 68.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 6.8e-13 77.0 61 68.9
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 6.8e-13 77.0 61 67.2
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 6.8e-13 77.0 61 67.2
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.8e-13 77.0 61 72.1
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 6.8e-13 77.0 61 67.2
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.2e-12 76.3 61 67.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.2e-12 76.3 61 65.6
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.5e-12 75.9 61 65.6
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.5e-12 75.9 62 67.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.5e-12 75.9 67 56.7
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.0e-12 75.5 61 67.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.0e-12 75.5 61 67.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 2.0e-12 75.5 62 67.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.6e-12 75.1 61 63.9
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.6e-12 75.1 61 65.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.6e-12 75.1 61 67.2
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 3.4e-12 74.7 61 67.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 3.4e-12 74.7 61 67.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.4e-12 74.3 59 64.4
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.7e-12 73.9 64 64.1
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 5.7e-12 73.9 61 65.6
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.7e-12 73.9 61 63.9
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.7e-12 73.2 61 63.9
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 9.7e-12 73.2 61 63.9
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 9.7e-12 73.2 61 67.2
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.3e-11 72.8 61 63.9
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.7e-11 72.4 61 63.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.7e-11 72.4 61 62.3
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.2e-11 72.0 61 63.9
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 2.8e-11 71.6 52 73.1
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.8e-11 71.6 52 73.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.8e-11 71.6 61 65.6
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.7e-11 71.2 64 62.5
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.7e-11 71.2 62 61.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.8e-11 70.9 55 67.3
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.8e-11 70.9 61 65.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 4.8e-11 70.9 61 63.9
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 6.3e-11 70.5 61 62.3
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 6.3e-11 70.5 61 62.3
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 8.3e-11 70.1 52 73.1
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.3e-11 70.1 62 62.9
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.1e-10 69.7 61 60.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.1e-10 69.7 62 62.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.1e-10 69.7 59 64.4
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.1e-10 69.7 59 62.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-10 69.7 59 62.7
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.4e-10 69.3 62 62.9
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.4e-10 69.3 54 66.7
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.4e-10 69.3 52 73.1
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.4e-10 69.3 62 61.3
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.8e-10 68.9 59 62.7
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.8e-10 68.9 54 66.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.1e-10 68.2 62 61.3
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.1e-10 68.2 61 62.3
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.1e-10 67.8 56 64.3
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.1e-10 67.8 56 64.3
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.1e-10 67.8 61 54.1
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 5.3e-10 67.4 62 61.3
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 5.3e-10 67.4 61 55.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 7.0e-10 67.0 61 59.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 7.0e-10 67.0 54 63.0
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 9.1e-10 66.6 59 61.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.2e-09 66.2 53 66.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.2e-09 66.2 53 66.0
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.2e-09 66.2 52 67.3
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.6e-09 65.9 59 59.3
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.0e-09 65.5 64 57.8
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.7e-09 65.1 63 60.3
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.7e-09 65.1 59 59.3
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.7e-09 65.1 59 59.3
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.7e-09 65.1 59 59.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.7e-09 65.1 59 59.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.7e-09 65.1 59 59.3
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.7e-09 65.1 59 59.3
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.5e-09 64.7 53 62.3
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.5e-09 64.3 62 58.1
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 4.5e-09 64.3 59 59.3
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.5e-09 64.3 53 66.0
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 5.9e-09 63.9 59 59.3
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 5.9e-09 63.9 53 64.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 5.9e-09 63.9 53 62.3
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 7.7e-09 63.5 59 59.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 7.7e-09 63.5 59 59.3
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.3e-08 62.8 61 55.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.3e-08 62.8 52 61.5
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 5.5e-07 57.4 56 58.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.2e-07 57.0 59 54.2
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 7.2e-07 57.0 61 47.5
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.6e-06 55.8 72 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.1e-06 55.5 56 51.8
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.6e-06 54.7 54 57.4
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.7e-06 54.3 54 57.4


User provided reference genes

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