Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.8e-290 1001.9 511 100.0
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 7.7e-286 986.5 511 98.0
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 6.4e-272 940.3 511 94.1
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.1e-268 929.5 524 90.8
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.4e-242 842.8 515 85.4
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.7e-227 791.6 512 77.9
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 2.2e-224 782.3 512 77.5
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 4.9e-224 781.2 511 80.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.9e-220 769.2 511 75.3
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 4.8e-219 764.6 512 75.4
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 4.1e-218 761.5 512 75.0
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 5.9e-217 757.7 531 73.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 7.6e-217 757.3 525 73.7
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.7e-216 756.1 511 74.2
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.9e-216 755.4 526 74.3
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 5.0e-216 754.6 524 72.9
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.1e-215 753.4 525 73.5
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 4.2e-215 751.5 512 74.2
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.2e-214 750.0 512 73.8
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.6e-214 749.6 512 73.6
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.1e-214 749.2 526 73.2
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.1e-214 749.2 525 72.8
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 2.1e-214 749.2 525 72.8
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.1e-214 749.2 513 74.3
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 7.9e-214 747.3 517 73.3
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 1.3e-213 746.5 526 72.2
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.3e-213 746.5 514 73.7
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 2.3e-213 745.7 525 73.1
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.3e-213 745.7 512 74.4
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 1.1e-212 743.4 512 73.6
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.1e-212 743.4 515 73.4
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 4.3e-212 741.5 510 73.3
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 4.3e-212 741.5 514 72.8
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.8e-211 738.8 511 72.6
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 1.4e-210 736.5 504 75.6
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.1e-210 735.3 511 72.2
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 9.0e-210 733.8 525 70.9
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.2e-209 733.4 535 70.7
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.5e-209 731.5 515 72.4
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 7.7e-209 730.7 514 72.0
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 3.2e-207 725.3 525 71.2
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 3.2e-207 725.3 512 72.5
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.5e-207 724.5 505 72.3
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 7.2e-207 724.2 515 71.1
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 2.1e-206 722.6 555 66.8
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.7e-206 722.2 513 71.3
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 4.6e-206 721.5 525 70.7
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 4.6e-206 721.5 512 72.1
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 6.1e-206 721.1 513 71.2
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 1.0e-205 720.3 564 67.0
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 3.0e-205 718.8 513 70.0
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 6.7e-205 717.6 514 70.6
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 5.7e-204 714.5 527 69.8
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 3.7e-203 711.8 525 69.7
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 3.7e-203 711.8 504 73.2
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 3.7e-203 711.8 507 72.2
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 6.3e-203 711.1 527 70.2
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 4.1e-202 708.4 513 69.8
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.9e-200 702.2 527 69.1
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 3.0e-197 692.2 512 67.0
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 1.3e-195 686.8 512 67.2
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 4.8e-195 684.9 512 68.8
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 4.8e-195 684.9 546 65.8
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.1e-194 683.7 513 67.8
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 7.0e-194 681.0 484 72.3
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.3e-192 676.8 505 66.3
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 6.5e-192 674.5 521 66.2
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.1e-191 673.7 511 66.7
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 6.1e-190 667.9 500 68.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 2.3e-189 666.0 513 66.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 4.0e-189 665.2 465 73.1
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.0e-188 662.9 511 66.1
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.0e-188 662.9 511 65.8
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.4e-188 661.8 502 67.3
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 7.5e-188 661.0 508 66.3
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-186 656.8 513 65.9
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.1e-186 655.6 511 66.1
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.1e-186 655.6 508 65.7
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 4.1e-186 655.2 513 65.7
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 9.1e-186 654.1 513 66.5
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 1.6e-185 653.3 532 64.5
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.0e-185 652.9 513 66.7
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 3.5e-185 652.1 532 64.1
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 8.5e-184 647.5 505 66.3
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.1e-183 647.1 511 67.7
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.9e-183 646.4 513 64.9
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.6e-182 643.3 508 64.4
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.7e-182 642.5 521 63.9
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.7e-182 642.5 521 63.3
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.7e-182 641.7 533 63.2
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.2e-181 638.3 522 63.8
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 8.8e-181 637.5 511 66.1
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 5.7e-180 634.8 517 65.0
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.4e-178 630.2 430 73.7
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 2.4e-178 629.4 513 64.1
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 1.3e-176 623.6 506 62.5
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 9.5e-175 617.5 523 63.3
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.6e-174 616.7 525 63.0
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 8.0e-174 614.4 523 63.1
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.0e-173 614.0 525 63.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 4.4e-172 608.6 514 61.1
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 2.4e-170 602.8 510 61.4
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 9.2e-170 600.9 521 61.6
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 1.2e-169 600.5 509 62.3
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.6e-166 590.1 441 69.2
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 2.0e-164 583.2 510 59.2
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.0e-160 570.9 448 65.8
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.9e-155 552.7 441 64.9
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 6.6e-152 541.6 496 58.9
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 4.3e-143 512.3 355 73.2
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 1.1e-127 461.1 391 61.4
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 4.0e-125 452.6 449 57.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.8e-120 437.2 528 46.0
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.9e-119 433.7 517 46.2
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 2.4e-117 426.8 388 59.8
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 7.1e-114 415.2 498 42.8
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 2.7e-113 413.3 469 52.0
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 5.1e-96 355.9 472 44.5
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.6e-57 228.0 137 81.0
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 1.4e-53 214.9 436 36.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 3.3e-42 177.2 124 72.6
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-32 145.2 136 61.0
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 2.4e-29 134.4 257 38.1
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.8e-24 118.2 77 72.7
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 4.0e-24 117.1 76 71.1
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 2.0e-23 114.8 73 74.0
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.2e-22 111.3 72 79.2
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 1.9e-21 108.2 104 58.7
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-21 107.8 142 39.4
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 1.3e-19 102.1 65 70.8
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 5.8e-15 86.7 269 27.5
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-11 74.3 53 58.5
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 2.4e-08 64.7 232 25.4
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 3.1e-08 64.3 117 39.3
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 5.3e-08 63.5 46 69.6


User provided reference genes

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