Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g012230 Solanum pennellii HOM05D002925 ORTHO05D003247 2.0e-89 332.4 172 100.0
PGSC0003DMG400036857 Solanum tuberosum HOM05D002925 ORTHO05D003247 5.8e-68 261.2 173 79.8
Sopen02g012380 Solanum pennellii HOM05D002925 ORTHO05D003247 3.5e-65 251.9 172 80.8
Sopen02g012270 Solanum pennellii HOM05D002925 ORTHO05D003247 1.6e-54 216.5 172 70.9
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 5.3e-45 184.9 199 59.3
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.2e-44 183.7 199 58.8
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.0e-44 183.0 198 59.1
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.5e-35 151.4 168 57.7
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.3e-30 137.1 123 64.2
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 4.1e-29 132.1 187 49.7
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 1.0e-27 127.5 183 48.1
Solyc04g074260.1 Solanum lycopersicum HOM05D002925 ORTHO05D003247 3.2e-26 122.5 151 53.0
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 3.0e-24 115.9 171 45.0
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 3.9e-24 115.5 174 45.4
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 4.3e-23 112.1 180 44.4
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 1.7e-22 110.2 125 50.4
Oeu029761.1 Olea europaea HOM05D002925 ORTHO05D003247 1.1e-21 107.5 180 42.8
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.8e-21 106.7 156 47.4
Oeu024826.1 Olea europaea HOM05D002925 ORTHO05D003247 3.1e-21 105.9 192 43.8
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 5.3e-21 105.1 170 45.9
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 6.9e-21 104.8 168 44.0
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 9.1e-21 104.4 183 43.7
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 3.4e-20 102.4 177 42.4
Haze_22282 Corylus avellana HOM05D002925 ORTHO05D003247 1.0e-19 100.9 194 41.8
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 1.0e-19 100.9 169 43.8
Lsat_1_v5_gn_1_3860 Lactuca sativa HOM05D002925 ORTHO05D003247 1.3e-19 100.5 159 43.4
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 5.0e-19 98.6 145 46.2
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 2.5e-18 96.3 150 45.3
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.2e-18 95.9 148 45.3
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 3.2e-18 95.9 145 48.3
Cpa.g.sc53.130 Carica papaya HOM05D002925 ORTHO05D003247 9.4e-18 94.4 178 40.4
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 1.2e-17 94.0 188 41.0
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.6e-17 92.4 166 42.2
HanXRQChr02g0043481 Helianthus annuus HOM05D002925 ORTHO05D003247 3.6e-17 92.4 153 41.8
Dinv44782 Davidia involucrata HOM05D002925 ORTHO05D003247 6.1e-17 91.7 145 42.1
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 7.9e-17 91.3 109 53.2
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.4e-16 90.5 194 41.8
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 1.4e-16 90.5 187 40.6
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 1.8e-16 90.1 170 41.8
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 2.3e-16 89.7 119 48.7
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 3.9e-16 89.0 192 39.1
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 3.9e-16 89.0 139 43.9
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 6.7e-16 88.2 195 38.5
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 8.8e-16 87.8 103 53.4
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 8.8e-16 87.8 103 53.4
Nn5g30080 Nelumbo nucifera HOM05D002925 ORTHO05D003247 2.0e-15 86.7 139 43.2
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 2.0e-15 86.7 190 41.6
SGA_v2.0_scaffold74G24575 Striga asiatica HOM05D002925 ORTHO05D003247 2.0e-15 86.7 139 42.4
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.0e-15 86.7 175 38.9
ECA232G0543 Erigeron canadensis HOM05D002925 ORTHO05D003247 2.6e-15 86.3 157 44.6
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 5.7e-15 85.1 138 44.9
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 7.4e-15 84.7 107 52.3
PSO531G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 7.4e-15 84.7 138 43.5
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 7.4e-15 84.7 149 40.9
Psat5g138880 Pisum sativum HOM05D002925 ORTHO05D003247 9.7e-15 84.3 181 35.4
arahy.Tifrunner.gnm1.ann1.66CWE3 Arachis hypogaea HOM05D002925 ORTHO05D003247 1.7e-14 83.6 119 45.4
Glyma.04G101200 Glycine max HOM05D002925 ORTHO05D003247 1.7e-14 83.6 167 40.7
Phvul.009G031600 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 1.7e-14 83.6 169 38.5
RcHm_v2.0_Chr7g0243951 Rosa chinensis HOM05D002925 ORTHO05D003247 2.2e-14 83.2 174 39.1
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 2.8e-14 82.8 172 37.8
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 2.8e-14 82.8 131 42.0
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 2.8e-14 82.8 135 42.2
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 2.8e-14 82.8 177 37.9
arahy.Tifrunner.gnm1.ann1.8R41I4 Arachis hypogaea HOM05D002925 ORTHO05D003247 3.7e-14 82.4 119 44.5
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 3.7e-14 82.4 189 36.0
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 4.8e-14 82.0 122 47.5
ClCG08G011160 Citrullus lanatus HOM05D002925 ORTHO05D003247 6.3e-14 81.6 152 42.1
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 8.2e-14 81.3 103 48.5
Glyma.06G102900 Glycine max HOM05D002925 ORTHO05D003247 8.2e-14 81.3 171 39.8
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 8.2e-14 81.3 126 42.9
VMungo1309G2842 Vigna mungo HOM05D002925 ORTHO05D003247 8.2e-14 81.3 168 39.9
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.1e-13 80.9 176 38.1
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.8e-13 80.1 103 47.6
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 2.4e-13 79.7 122 42.6
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 2.4e-13 79.7 170 36.5
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 3.1e-13 79.3 169 37.3
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 4.1e-13 79.0 150 39.3
CsaV3_2G029730 Cucumis sativus L. HOM05D002925 ORTHO05D003247 5.3e-13 78.6 126 44.4
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 6.9e-13 78.2 114 45.6
MD00G1009700 Malus domestica HOM05D002925 ORTHO05D003247 1.2e-12 77.4 165 39.4
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 1.5e-12 77.0 189 39.7
MELO3C011031.2 Cucumis melo HOM05D002925 ORTHO05D003247 1.5e-12 77.0 116 46.6
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.6e-12 76.3 189 34.9
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.6e-12 76.3 189 34.9
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.6e-12 76.3 189 34.9
Medtr3g074640 Medicago truncatula HOM05D002925 ORTHO05D003247 2.6e-12 76.3 147 39.5
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 5.9e-12 75.1 79 55.7
ECA247G0600 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.3e-11 73.9 158 38.6
Lj1g0024313 Lotus japonicus HOM05D002925 ORTHO05D003247 1.3e-11 73.9 126 46.8
Sed0026617 Sechium edule HOM05D002925 ORTHO05D003247 2.2e-11 73.2 121 44.6
Ca_15252_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 6.5e-11 71.6 163 37.4
TPR.G26131 Trifolium pratense HOM05D002925 ORTHO05D003247 6.5e-11 71.6 188 33.0
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 8.5e-11 71.2 110 39.1
AL1G35760 Arabidopsis lyrata HOM05D002925 ORTHO05D003247 1.1e-10 70.9 178 33.7
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 1.1e-10 70.9 186 35.5
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.1e-10 70.9 110 42.7
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 1.4e-10 70.5 60 61.7
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.9e-10 70.1 114 41.2
AT1G22310 Arabidopsis thaliana HOM05D002925 ORTHO05D003247 2.5e-10 69.7 180 33.9
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 3.2e-10 69.3 112 41.1
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 4.2e-10 68.9 166 32.5
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 4.2e-10 68.9 61 57.4
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 5.5e-10 68.6 62 53.2
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 5.5e-10 68.6 90 46.7
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 9.4e-10 67.8 76 47.4
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 9.4e-10 67.8 81 50.6
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 9.4e-10 67.8 157 31.8
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 9.4e-10 67.8 96 39.6
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 1.6e-09 67.0 129 38.0
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 1.6e-09 67.0 72 50.0
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 1.6e-09 67.0 72 50.0
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 2.1e-09 66.6 111 40.5
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 4.7e-09 65.5 121 38.0
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 6.1e-09 65.1 168 33.9
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 6.1e-09 65.1 149 35.6
PSO541G2635 Papaver somniferum HOM05D002925 ORTHO05D003247 6.1e-09 65.1 120 39.2
C07p21440 Brassica napus HOM05D002925 ORTHO05D003247 8.0e-09 64.7 170 34.1
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 8.0e-09 64.7 163 34.4
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.0e-08 64.3 157 29.9
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 1.4e-08 63.9 117 37.6
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 1.8e-08 63.5 58 58.6
Cpa.g.sc42.36 Carica papaya HOM05D002925 ORTHO05D003247 2.3e-08 63.2 75 44.0
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 2.3e-08 63.2 173 33.5
Sp1g19810 Schrenkiella parvula HOM05D002925 ORTHO05D003247 2.3e-08 63.2 113 42.5
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 3.0e-08 62.8 186 30.6
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 3.0e-08 62.8 107 43.0
A07p14550 Brassica napus HOM05D002925 ORTHO05D003247 3.9e-08 62.4 71 53.5
BraA07t29201Z Brassica rapa HOM05D002925 ORTHO05D003247 3.9e-08 62.4 71 53.5
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 3.9e-08 62.4 150 30.0
THA.LOC104800147 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 3.9e-08 62.4 118 43.2
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 5.2e-08 62.0 110 38.2
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 5.2e-08 62.0 106 38.7
BcaB03g14218 Brassica carinata HOM05D002925 ORTHO05D003247 6.7e-08 61.6 76 52.6
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 8.8e-08 61.2 109 37.6
BolC7t42671H Brassica oleracea HOM05D000298 ORTHO05D003247 1.1e-07 60.8 75 52.0
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 1.1e-07 60.8 132 35.6
Thhalv10007200m.g Eutrema salsugineum HOM05D002925 ORTHO05D003247 1.1e-07 60.8 68 54.4
Rhsim11G0125300 Rhododendron simsii HOM05D002925 ORTHO05D050653 1.1e-07 60.8 58 55.2
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 1.5e-07 60.5 146 34.9
Carub.0001s2186 Capsella rubella HOM05D002925 ORTHO05D003247 2.0e-07 60.1 180 33.3
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.0e-07 60.1 73 49.3
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 2.6e-07 59.7 162 32.1
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.3e-07 59.3 62 54.8
Atru.chr10.1121 Acer truncatum HOM05D002925 ORTHO05D003247 5.7e-07 58.5 173 33.5
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 5.7e-07 58.5 117 38.5
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 5.7e-07 58.5 105 38.1
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 5.7e-07 58.5 83 43.4
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 5.7e-07 58.5 204 29.9
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 5.7e-07 58.5 165 31.5
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 9.7e-07 57.8 109 39.4
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 9.7e-07 57.8 162 30.9
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 2.2e-06 56.6 168 31.5
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 3.7e-06 55.8 103 37.9
Os08g0485700 Oryza sativa ssp. japonica HOM05D002925 ORTHO05D003247 3.7e-06 55.8 108 37.0
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 4.8e-06 55.5 108 34.3
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 6.3e-06 55.1 99 33.3


User provided reference genes

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