Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 0.0e+00 1285.4 653 100.0
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 0.0e+00 1278.1 653 99.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 0.0e+00 1246.9 653 96.6
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 0.0e+00 1139.8 648 88.6
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1114.4 623 88.6
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1112.4 623 89.6
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.3e-306 1055.0 658 81.8
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 5.4e-300 1033.9 649 81.2
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 5.6e-273 944.1 658 71.6
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.8e-264 915.2 652 69.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 8.4e-261 903.7 655 70.1
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 9.3e-260 900.2 653 68.5
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 7.9e-259 897.1 652 68.9
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.5e-254 882.9 649 68.1
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.3e-253 879.8 662 67.4
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 3.8e-253 878.2 652 66.1
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 6.1e-251 870.9 658 64.7
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 7.9e-251 870.5 659 66.9
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 2.4e-247 859.0 650 67.4
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.6e-246 855.5 659 66.5
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 7.7e-246 854.0 657 64.7
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.2e-243 846.7 682 63.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 6.7e-242 840.9 650 64.5
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 6.3e-240 834.3 658 63.5
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 7.0e-239 830.9 649 64.9
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 7.0e-239 830.9 654 64.1
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 5.0e-237 824.7 648 64.2
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.9e-236 822.8 658 62.8
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 9.4e-236 820.5 653 63.2
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.6e-235 819.7 646 63.0
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 6.1e-235 817.8 652 64.4
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.0e-235 817.4 652 64.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.0e-234 817.0 655 62.1
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.4e-234 816.6 658 63.1
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.3e-234 815.8 652 64.4
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 3.9e-234 815.1 661 62.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.3e-232 810.1 660 61.4
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.7e-232 809.7 648 62.8
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.7e-232 809.7 653 62.9
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.2e-230 803.5 661 61.6
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 3.8e-229 798.5 657 61.2
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.9e-228 796.2 653 60.8
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 3.2e-228 795.4 656 60.5
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 9.4e-228 793.9 659 59.6
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.2e-227 793.5 657 59.2
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 2.7e-227 792.3 658 60.9
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.7e-227 792.3 656 61.1
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 3.6e-227 792.0 657 60.6
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.0e-226 788.9 661 60.8
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.0e-226 788.5 658 60.8
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.8e-226 787.3 656 61.0
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.2e-225 786.9 657 60.1
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-225 786.6 656 61.4
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 4.4e-225 785.0 654 61.2
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.8e-224 782.3 648 60.3
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 4.8e-224 781.6 643 60.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.3e-224 781.2 656 60.7
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 2.4e-223 779.2 655 61.7
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 7.0e-223 777.7 652 61.7
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 9.1e-223 777.3 652 60.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 9.1e-223 777.3 648 60.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.2e-222 776.9 657 60.0
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 4.5e-222 775.0 652 60.4
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 1.0e-221 773.9 652 60.3
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 1.7e-221 773.1 658 58.5
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.2e-221 772.7 644 61.0
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.2e-221 772.7 651 60.4
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.2e-221 772.7 651 60.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 2.2e-221 772.7 659 59.9
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 5.0e-221 771.5 667 60.1
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.5e-220 770.0 656 59.6
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 4.7e-219 765.0 656 59.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 8.0e-219 764.2 662 59.4
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.4e-218 763.5 656 59.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.0e-218 762.3 650 58.9
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.7e-216 756.5 666 58.1
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 6.3e-216 754.6 659 58.7
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 4.1e-215 751.9 659 58.7
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.3e-213 746.1 647 58.0
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 5.0e-213 745.0 653 59.0
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 5.0e-213 745.0 668 56.9
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 8.9e-210 734.2 659 56.8
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.1e-207 727.2 651 58.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 3.1e-207 725.7 664 56.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 4.1e-207 725.3 649 56.7
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 7.0e-207 724.5 649 58.2
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.0e-205 720.7 653 55.1
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 8.6e-205 717.6 648 56.0
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 7.3e-204 714.5 653 56.7
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 8.0e-203 711.1 655 55.3
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.2e-202 708.4 658 55.5
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 9.8e-201 704.1 652 57.1
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 3.2e-199 699.1 656 55.2
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.6e-195 685.6 491 68.6
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.0e-189 667.5 684 51.6
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 2.3e-186 656.4 509 66.0
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 3.5e-182 642.5 669 50.7
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 3.2e-175 619.4 655 49.8
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.9e-172 610.1 657 49.8
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 9.3e-151 538.1 477 57.2
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 5.3e-146 522.3 424 63.2
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.7e-144 517.3 622 47.7
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 3.9e-141 506.1 522 50.6
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.1e-135 488.0 356 67.4
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.3e-131 474.6 361 64.5
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 3.8e-128 463.0 652 39.1
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 9.1e-122 441.8 269 82.9
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.7e-107 394.4 643 36.7
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 5.0e-104 382.9 656 35.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.5e-95 354.8 505 40.0
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 5.0e-88 329.7 359 46.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 5.8e-84 316.2 283 53.4
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.3e-80 305.1 272 56.2
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.0e-76 291.2 755 28.5
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 3.5e-65 253.8 356 40.4
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 8.6e-64 249.2 699 27.3
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-55 221.5 264 48.1
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-48 198.7 239 46.4
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 3.3e-31 141.0 127 57.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 7.4e-31 139.8 80 75.0
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.0e-27 129.4 235 34.9
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.3e-24 118.2 84 69.0
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.1e-24 117.1 103 60.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.3e-23 114.0 101 49.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 5.7e-23 113.6 206 30.6
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.1e-21 109.4 76 69.7
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 9.0e-21 106.3 206 32.0
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.0e-19 102.8 86 48.8
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.2e-17 95.9 214 31.8
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.6e-17 94.0 62 75.8
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.8e-16 92.0 95 50.5
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.0e-16 91.3 166 34.9
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.1e-16 90.5 65 67.7
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 9.7e-15 86.3 101 46.5
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.0e-08 66.2 95 42.1


User provided reference genes

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