Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 4.7e-172 607.8 324 100.0
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 7.1e-168 594.0 324 94.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.1e-136 490.3 326 84.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.2e-132 476.1 330 80.9
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 5.3e-115 418.3 245 82.9
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 8.5e-113 411.0 323 71.8
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.9e-112 409.8 245 81.6
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.7e-111 405.2 245 82.0
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.3e-108 397.1 245 80.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.7e-108 396.7 245 79.2
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.8e-108 396.0 245 79.6
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 6.3e-108 394.8 253 77.9
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.8e-107 393.3 245 77.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.8e-107 393.3 337 64.1
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.6e-106 390.2 304 67.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.6e-106 390.2 245 76.7
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.6e-106 390.2 272 71.3
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.0e-106 389.8 246 79.3
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.0e-106 389.8 245 78.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.7e-106 389.4 245 79.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 3.5e-106 389.0 245 76.3
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 4.5e-106 388.7 246 78.9
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.5e-106 388.7 245 78.8
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.3e-105 387.1 245 75.9
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.7e-105 386.7 262 74.0
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.7e-105 386.7 249 77.1
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.9e-105 386.0 245 78.4
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.9e-105 386.0 246 76.4
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.8e-105 385.6 245 75.9
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 6.5e-105 384.8 242 79.3
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 8.5e-105 384.4 245 76.3
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.1e-104 384.0 245 76.3
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.9e-104 383.3 245 75.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.5e-104 382.9 342 63.7
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.5e-104 382.9 245 76.7
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 3.2e-104 382.5 245 76.3
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 5.5e-104 381.7 246 76.4
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 5.5e-104 381.7 246 75.2
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 5.5e-104 381.7 245 76.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 5.5e-104 381.7 252 76.6
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 7.2e-104 381.3 245 78.0
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.6e-103 380.2 245 73.9
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.6e-103 380.2 252 75.8
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.1e-103 379.8 270 69.6
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 3.6e-103 379.0 326 62.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 3.6e-103 379.0 245 74.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.6e-103 379.0 301 69.8
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.7e-103 378.6 246 74.4
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.7e-103 378.6 246 74.4
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 4.7e-103 378.6 245 75.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 6.1e-103 378.3 245 75.1
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 8.0e-103 377.9 245 75.5
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.0e-102 377.5 273 68.5
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.4e-102 377.1 245 74.7
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.4e-102 377.1 240 77.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 2.3e-102 376.3 245 74.3
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.0e-102 375.9 256 75.4
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 4.0e-102 375.6 273 68.5
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 5.2e-102 375.2 243 74.5
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 8.8e-102 374.4 245 74.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.2e-101 374.0 243 74.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-101 373.6 323 63.5
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.0e-101 373.2 299 63.9
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.4e-101 372.5 245 73.9
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 4.4e-101 372.1 245 73.1
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.2e-100 369.8 271 70.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.4e-99 367.1 410 54.1
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.4e-99 367.1 292 68.8
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 4.1e-99 365.5 245 74.7
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 7.0e-99 364.8 298 63.4
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 7.7e-98 361.3 245 72.2
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.7e-97 360.1 245 69.8
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 2.3e-97 359.8 239 74.9
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 3.3e-96 355.9 319 65.5
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 2.1e-95 353.2 239 72.4
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.8e-95 352.8 245 71.4
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 8.0e-95 351.3 267 65.9
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.0e-94 350.9 246 68.7
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.8e-94 350.1 239 72.8
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-94 349.7 239 72.0
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-94 349.7 239 72.0
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 4.0e-94 349.0 239 71.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 4.0e-94 349.0 239 71.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 5.2e-94 348.6 245 66.9
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.2e-94 348.6 246 68.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 6.8e-94 348.2 239 72.4
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.2e-93 347.4 239 72.8
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 3.4e-93 345.9 243 67.9
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 7.5e-93 344.7 240 69.2
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.3e-92 344.0 239 71.5
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.7e-92 342.4 319 58.6
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.7e-92 342.4 245 70.2
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 5.4e-91 338.6 286 59.8
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.5e-85 320.5 239 66.5
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.4e-85 319.3 238 66.0
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 7.5e-85 318.2 239 65.7
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 9.8e-85 317.8 239 65.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 6.4e-84 315.1 239 65.3
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 5.8e-77 292.0 194 72.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 5.8e-77 292.0 271 56.1
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.1e-72 277.7 245 58.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 3.4e-69 266.2 244 50.0
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.9e-68 263.1 249 55.8
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.2e-67 259.6 247 51.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.1e-66 256.9 241 50.6
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 9.9e-61 238.0 161 72.7
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.5e-56 223.4 237 49.8
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-53 214.5 186 61.3
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.4e-51 206.8 139 71.9
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 3.5e-50 203.0 192 52.1
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-48 196.8 183 58.5
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.0e-46 189.5 162 61.1
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.0e-46 189.5 141 67.4
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.6e-42 177.6 118 73.7
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.1e-40 171.4 184 54.9
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.1e-38 163.3 164 56.7
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.8e-37 159.1 105 70.5
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 3.8e-36 156.4 105 69.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 2.1e-34 150.6 162 54.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.7e-33 145.6 102 68.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.9e-32 144.1 104 68.3
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 6.2e-31 139.0 93 73.1
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.6e-29 133.7 111 64.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 6.5e-28 129.0 102 58.8
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.2e-27 126.7 74 85.1
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.0e-25 121.7 70 77.1
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.5e-24 117.1 200 32.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 6.3e-23 112.5 80 67.5
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 3.1e-22 110.2 67 73.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 6.9e-22 109.0 80 66.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 3.2e-19 100.1 79 57.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 9.4e-19 98.6 82 58.5
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.8e-17 94.4 115 48.7
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 2.3e-17 94.0 189 29.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.8e-15 87.0 56 78.6
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 6.3e-15 85.9 56 76.8
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.4e-14 84.7 50 78.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.6e-13 80.5 147 35.4
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.4e-13 80.1 99 46.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.3e-12 78.2 160 33.8
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 9.4e-11 72.0 136 37.5
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 5.1e-09 66.2 60 53.3
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.0e-08 64.3 48 58.3
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 4.8e-07 59.7 32 81.2


User provided reference genes

Program Settings