Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.5e-115 418.3 210 100.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.5e-113 412.9 210 98.6
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.8e-111 403.7 210 96.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.6e-110 402.1 210 94.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.2e-107 393.3 208 93.3
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 7.0e-100 367.5 185 98.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.0e-98 361.3 185 96.8
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 6.3e-93 344.4 208 80.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.2e-92 342.0 208 82.7
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.1e-92 341.7 208 80.8
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.0e-92 340.9 208 81.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.9e-91 337.8 208 79.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.0e-90 337.0 207 81.2
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.3e-90 335.9 202 82.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.6e-90 334.3 206 80.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.5e-89 333.2 203 82.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.3e-89 331.6 206 81.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 9.5e-89 330.5 202 82.7
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.6e-88 329.7 210 79.0
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.1e-88 329.3 208 78.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 4.7e-88 328.2 208 77.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-87 326.2 203 80.8
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.3e-87 325.9 203 80.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.3e-87 325.9 202 82.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.2e-87 324.7 203 79.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 8.9e-87 323.9 203 80.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-86 323.6 202 80.2
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.5e-86 323.2 202 81.2
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.5e-86 323.2 210 78.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.6e-86 322.4 210 77.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.6e-86 322.4 202 81.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.6e-86 322.4 210 78.6
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.4e-86 322.0 203 77.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.4e-86 321.6 204 80.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 4.4e-86 321.6 204 80.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.4e-86 321.6 205 79.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 7.5e-86 320.9 203 80.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.7e-85 319.7 202 78.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.2e-85 319.3 202 79.2
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.2e-85 319.3 204 78.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.9e-85 318.9 204 78.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.7e-85 318.5 203 79.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.7e-85 318.5 203 77.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.9e-85 318.2 210 77.6
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.9e-85 318.2 210 77.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.9e-85 318.2 204 77.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 6.4e-85 317.8 208 76.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.9e-84 316.2 202 79.7
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.4e-84 315.8 202 79.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.2e-84 315.5 200 78.5
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.1e-84 315.1 204 77.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 4.1e-84 315.1 206 76.7
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 5.4e-84 314.7 210 75.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 5.4e-84 314.7 210 76.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 7.0e-84 314.3 210 75.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 7.0e-84 314.3 210 75.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.2e-83 313.5 202 79.7
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.5e-83 312.0 203 78.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 4.6e-83 311.6 210 75.2
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.6e-83 311.6 210 75.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 4.6e-83 311.6 203 76.4
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 4.6e-83 311.6 204 76.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.6e-83 311.6 204 76.5
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 6.0e-83 311.2 202 77.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 7.8e-83 310.8 199 76.9
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 7.8e-83 310.8 202 76.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 7.8e-83 310.8 199 76.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 7.8e-83 310.8 203 75.4
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.8e-83 310.8 235 68.5
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.0e-82 310.5 204 76.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.7e-82 309.7 199 75.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-82 309.7 203 77.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.7e-82 309.7 218 74.3
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.3e-82 309.3 203 77.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.0e-82 308.9 199 76.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 5.0e-82 308.1 202 76.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.6e-82 307.8 238 69.3
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 8.6e-82 307.4 202 74.8
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 8.6e-82 307.4 202 76.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.6e-82 307.4 208 74.0
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.5e-81 306.6 199 76.4
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.9e-81 306.2 202 75.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.9e-81 306.2 202 74.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.9e-81 306.2 203 75.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.9e-81 306.2 202 75.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.9e-81 306.2 201 77.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.9e-81 306.2 201 75.6
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.5e-81 305.8 214 71.5
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.5e-81 305.8 233 70.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.5e-81 305.8 201 75.6
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 4.3e-81 305.1 202 75.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.6e-81 304.7 203 74.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 5.6e-81 304.7 202 74.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 7.3e-81 304.3 199 74.9
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 7.3e-81 304.3 232 67.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.2e-80 303.5 199 75.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-80 303.5 209 72.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.6e-80 303.1 199 76.4
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.8e-80 302.4 201 76.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.6e-80 302.0 199 75.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.7e-80 301.6 201 75.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 8.0e-80 300.8 199 74.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 8.0e-80 300.8 209 72.2
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.4e-79 300.1 206 72.3
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-79 299.7 185 81.1
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.1e-79 298.9 206 72.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.1e-79 298.9 203 74.9
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.0e-79 298.5 202 72.3
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.8e-79 297.7 199 74.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-78 297.0 208 70.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.2e-78 297.0 202 74.3
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.5e-78 296.6 198 75.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.6e-78 295.8 203 74.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.6e-78 295.8 202 73.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.7e-77 293.1 184 78.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.7e-77 292.0 263 61.6
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.7e-77 292.0 200 72.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 3.7e-77 292.0 198 74.2
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 8.3e-77 290.8 185 79.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.3e-77 290.8 184 79.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.9e-76 289.7 203 73.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.1e-76 288.5 197 74.6
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.6e-75 286.6 185 77.3
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-75 286.6 184 77.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 6.0e-75 284.6 195 73.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.8e-72 275.8 204 71.6
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.9e-69 265.0 216 65.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.4e-69 264.6 327 49.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 5.6e-65 251.5 170 75.3
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.2e-64 250.4 185 65.9
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.7e-61 240.0 170 72.4
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.2e-61 239.6 204 63.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.4e-60 236.1 209 57.4
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 4.2e-60 235.3 140 82.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.1e-59 233.0 140 82.1
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.5e-59 232.3 194 58.2
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-58 229.2 201 62.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.9e-57 226.5 218 58.3
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.5e-57 226.1 194 59.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.3e-57 225.3 161 70.2
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.8e-56 221.9 202 57.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 6.2e-56 221.5 130 83.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.4e-45 184.5 100 89.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.0e-39 164.5 227 44.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.0e-37 161.0 193 49.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.0e-35 151.8 84 88.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.5e-33 146.4 87 78.2
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-32 144.1 112 67.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.8e-32 142.9 227 42.3
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 6.2e-32 141.7 85 83.5
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.4e-23 113.2 83 66.3
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.0e-23 111.3 121 50.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.2e-22 110.9 151 42.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.4e-22 109.4 201 37.8
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 8.2e-16 88.2 240 30.8
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 9.1e-15 84.7 56 75.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.5e-14 82.4 65 66.2
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 7.7e-14 81.6 63 66.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.0e-13 81.3 41 90.2
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.3e-13 80.9 40 90.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.8e-13 79.3 40 87.5
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.5e-13 78.2 40 85.0
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.6e-11 72.8 40 82.5


User provided reference genes

Program Settings