Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.5e-292 1008.8 523 100.0
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.5e-289 998.8 523 98.9
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 8.2e-275 949.9 523 94.1
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 4.5e-180 635.2 565 65.1
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.4e-120 437.6 346 71.7
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.7e-99 367.5 561 44.9
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 9.0e-96 355.1 538 44.1
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 8.7e-91 338.6 557 44.2
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.2e-87 328.2 558 43.7
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 4.9e-86 322.8 535 42.1
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 2.5e-82 310.5 476 42.4
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 2.0e-79 300.8 558 40.1
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 5.8e-79 299.3 533 41.1
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 4.2e-77 293.1 521 41.3
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 4.6e-76 289.7 540 39.4
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 7.9e-76 288.9 292 54.8
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.3e-75 288.1 574 39.0
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.3e-75 287.3 535 41.1
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 5.6e-74 282.7 577 36.4
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 8.2e-73 278.9 457 42.9
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.8e-72 277.7 525 39.6
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.8e-72 277.7 540 38.0
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 6.5e-70 269.2 405 43.5
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.1e-69 268.5 519 41.6
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 3.2e-69 266.9 535 38.9
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 9.3e-69 265.4 329 51.4
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 1.6e-68 264.6 487 39.2
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 6.0e-68 262.7 336 47.3
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.3e-67 260.8 518 38.0
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 6.7e-67 259.2 483 38.3
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.1e-66 258.5 387 43.7
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.1e-66 258.5 595 36.6
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.5e-66 258.1 388 45.9
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 3.3e-66 256.9 441 42.6
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.3e-65 255.0 537 38.4
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 5.3e-64 249.6 552 36.4
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 3.8e-62 243.4 317 49.8
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 5.0e-62 243.0 306 49.7
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 8.5e-62 242.3 174 73.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.1e-61 241.9 309 46.3
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.4e-61 241.5 331 44.7
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 1.4e-61 241.5 579 35.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.2e-61 240.0 306 50.0
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.6e-60 238.0 307 49.5
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.0e-59 235.3 335 46.3
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 1.1e-58 231.9 304 46.4
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.1e-58 231.9 388 43.0
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 1.5e-58 231.5 486 36.6
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 3.3e-58 230.3 219 58.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 4.3e-58 229.9 264 50.8
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 9.7e-58 228.8 416 40.4
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.3e-57 228.4 476 38.4
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 1.7e-57 228.0 345 44.3
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 8.2e-57 225.7 322 46.0
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 9.1e-56 222.2 325 45.8
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 1.2e-55 221.9 549 36.2
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.5e-55 221.5 325 45.5
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 7.7e-55 219.2 317 46.1
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.3e-54 218.4 517 36.8
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 3.8e-54 216.9 224 56.2
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 5.0e-54 216.5 515 36.1
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 8.5e-54 215.7 353 43.3
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 8.5e-54 215.7 303 47.2
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.1e-53 215.3 477 35.0
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.1e-53 215.3 272 50.4
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 1.1e-53 215.3 265 50.9
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.2e-53 213.8 354 41.2
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.2e-52 211.8 293 46.4
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 4.7e-52 209.9 579 33.0
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.9e-51 206.8 306 44.4
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 3.9e-51 206.8 206 54.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.0e-50 204.5 285 47.0
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.4e-50 203.4 285 46.7
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.7e-50 202.2 319 43.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.2e-49 201.1 285 46.7
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 3.7e-49 200.3 474 34.8
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.2e-49 199.1 319 42.6
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-48 198.7 285 46.0
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.4e-48 198.4 434 39.4
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 2.4e-48 197.6 541 33.6
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.2e-47 195.3 284 45.8
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.5e-47 194.9 312 40.7
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.6e-47 194.1 312 44.2
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 7.7e-47 192.6 177 59.9
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.3e-46 191.8 484 34.5
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.2e-45 187.2 320 41.2
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.4e-43 181.8 152 62.5
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 1.8e-43 181.4 309 42.1
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 6.7e-43 179.5 298 40.6
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.1e-42 178.7 304 41.1
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 2.8e-41 174.1 286 42.7
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-41 174.1 286 42.7
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 2.8e-41 174.1 286 42.7
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.8e-41 174.1 286 42.0
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 3.7e-41 173.7 286 42.0
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 8.2e-41 172.6 285 42.5
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.4e-40 171.8 312 40.4
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 1.4e-40 171.8 403 34.2
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 9.1e-40 169.1 290 41.4
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 4.5e-39 166.8 223 48.4
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.9e-38 164.1 214 48.1
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 6.5e-38 162.9 322 39.1
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.5e-37 161.8 197 50.8
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 8.8e-35 152.5 383 36.3
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 4.4e-34 150.2 233 43.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 2.4e-32 144.4 161 51.6
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 4.1e-32 143.7 347 36.0
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 2.5e-29 134.4 294 36.7
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.0e-27 129.0 249 33.3
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-26 125.6 237 36.7
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 9.8e-26 122.5 270 36.3
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.1e-24 117.1 216 37.0
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.9e-23 113.2 126 52.4
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 1.0e-22 112.5 456 29.2
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 5.5e-21 106.7 200 35.0
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.1e-20 104.8 263 34.2
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 2.1e-20 104.8 179 41.3
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.8e-20 104.4 355 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.2e-18 99.0 234 32.1
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-17 94.4 115 45.2
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 1.4e-16 92.0 114 43.9
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 4.5e-15 87.0 182 33.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 2.3e-14 84.7 109 43.1
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.1e-13 82.4 217 34.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 1.5e-13 82.0 114 42.1
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.3e-13 80.9 187 32.6
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 5.6e-13 80.1 186 32.8
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 5.6e-13 80.1 256 28.1
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.6e-12 77.4 215 30.2
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.0e-11 75.9 203 33.0
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.1e-11 74.3 62 54.8
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.4e-10 70.9 174 29.9
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 7.5e-10 69.7 309 28.8
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 1.3e-09 68.9 268 26.1
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.3e-09 68.9 202 29.7
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.3e-09 68.9 212 28.8
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 4.9e-09 67.0 183 30.1
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 4.9e-09 67.0 81 48.1
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 4.9e-09 67.0 210 27.6
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.1e-08 65.9 197 28.4
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.4e-08 65.5 207 28.5
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 2.4e-08 64.7 189 30.7
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 2.4e-08 64.7 254 29.1
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.4e-08 64.7 213 27.2
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 2.4e-08 64.7 213 27.2
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 2.4e-08 64.7 213 27.2
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 3.2e-08 64.3 210 29.5
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 4.1e-08 63.9 182 28.0
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 9.2e-08 62.8 208 26.9
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 9.2e-08 62.8 123 34.1
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 3.5e-07 60.8 250 26.0
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 3.5e-07 60.8 78 43.6
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.5e-07 60.8 173 30.1
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 6.0e-07 60.1 182 28.6
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 6.0e-07 60.1 199 25.6
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.8e-07 59.7 200 28.5
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.0e-06 59.3 182 28.6
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.3e-06 58.9 200 29.0
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 1.7e-06 58.5 164 27.4
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.3e-06 58.2 183 27.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 2.3e-06 58.2 227 27.3
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 3.0e-06 57.8 199 28.1
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.0e-06 57.8 182 29.1
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 3.0e-06 57.8 42 64.3
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 3.9e-06 57.4 182 30.2
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 5.0e-06 57.0 183 27.3
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 6.6e-06 56.6 202 27.2
SEGI_20616 Sequoiadendron giganteum HOM05D042574 ORTHO05D384790 6.6e-06 56.6 76 38.2
SEGI_40313 Sequoiadendron giganteum HOM05D042574 ORTHO05D384823 6.6e-06 56.6 76 38.2
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 8.6e-06 56.2 199 27.1
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 8.6e-06 56.2 185 28.1
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 8.6e-06 56.2 174 28.2
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 8.6e-06 56.2 161 28.0
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 8.6e-06 56.2 173 26.0
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 8.6e-06 56.2 202 26.2


User provided reference genes

Program Settings