Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g052810 Solanum pennellii HOM05D004017 ORTHO05D004612 2.0e-46 188.7 92 100.0
Solyc01g110640.2 Solanum lycopersicum HOM05D004017 ORTHO05D013629 2.2e-34 148.7 79 92.4
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.5e-19 98.2 71 66.2
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 7.7e-19 97.1 69 69.6
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 8.5e-18 93.6 70 65.7
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 1.1e-17 93.2 70 67.1
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.9e-17 92.4 69 65.2
Sopen02g027370 Solanum pennellii HOM05D004017 ORTHO05D004612 1.9e-17 92.4 62 74.2
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 7.2e-17 90.5 72 66.7
Sopen01g045030 Solanum pennellii HOM05D004017 ORTHO05D004612 4.7e-16 87.8 55 76.4
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.3e-15 85.5 70 58.6
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.6e-14 82.0 88 52.3
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.6e-14 82.0 88 52.3
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.6e-14 82.0 88 52.3
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.6e-14 82.0 88 52.3
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 3.4e-14 81.6 88 52.3
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 1.3e-13 79.7 70 55.7
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 1.7e-13 79.3 70 54.3
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 2.2e-13 79.0 58 67.2
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 2.8e-13 78.6 69 56.5
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.9e-13 77.8 88 51.1
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 6.3e-13 77.4 70 52.9
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 6.3e-13 77.4 72 51.4
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.1e-12 76.6 70 57.1
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.1e-12 76.6 69 56.5
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 2.4e-12 75.5 72 50.0
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.1e-12 74.7 84 50.0
Solyc01g102630.4 Solanum lycopersicum HOM05D004017 ORTHO05D004612 4.1e-12 74.7 50 72.0
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 1.2e-11 73.2 70 50.0
Sopen02g033710 Solanum pennellii HOM05D004017 ORTHO05D004612 1.6e-11 72.8 55 65.5
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 4.5e-11 71.2 70 50.0
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 4.5e-11 71.2 70 48.6
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 7.8e-11 70.5 70 51.4
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 7.8e-11 70.5 72 52.8
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 1.0e-10 70.1 72 47.2
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 1.3e-10 69.7 60 56.7
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 1.3e-10 69.7 68 50.0
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 1.3e-10 69.7 60 55.0
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 1.7e-10 69.3 69 49.3
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 2.3e-10 68.9 62 53.2
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 2.9e-10 68.6 70 47.1
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 2.9e-10 68.6 66 48.5
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 2.9e-10 68.6 66 56.1
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 3.8e-10 68.2 60 56.7
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 3.8e-10 68.2 70 50.0
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 3.8e-10 68.2 70 47.1
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 6.6e-10 67.4 72 47.2
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 6.6e-10 67.4 72 45.8
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 6.6e-10 67.4 70 44.3
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 8.6e-10 67.0 73 45.2
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 1.1e-09 66.6 70 48.6
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.1e-09 66.6 71 46.5
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.1e-09 66.6 72 50.0
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 1.5e-09 66.2 67 46.3
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 1.5e-09 66.2 60 51.7
Sopen02g033750 Solanum pennellii HOM05D004017 ORTHO05D004612 2.5e-09 65.5 54 61.1
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 4.3e-09 64.7 67 44.8
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 4.3e-09 64.7 69 49.3
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 4.3e-09 64.7 53 58.5
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 5.6e-09 64.3 53 52.8
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 5.6e-09 64.3 53 52.8
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 5.6e-09 64.3 53 52.8
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 5.6e-09 64.3 66 50.0
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 7.3e-09 63.9 70 48.6
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.2e-08 63.2 62 48.4
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 1.2e-08 63.2 63 52.4
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 1.2e-08 63.2 63 54.0
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 1.6e-08 62.8 63 52.4
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 1.6e-08 62.8 54 57.4
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.1e-08 62.4 53 50.9
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.1e-08 62.4 53 50.9
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 2.8e-08 62.0 63 52.4
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 2.8e-08 62.0 63 52.4
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 2.8e-08 62.0 69 49.3
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 2.8e-08 62.0 62 48.4
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 2.8e-08 62.0 70 40.0
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 3.6e-08 61.6 72 41.7
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 3.6e-08 61.6 63 52.4
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 3.6e-08 61.6 73 43.8
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 8.0e-08 60.5 54 57.4
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 8.0e-08 60.5 59 49.2
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 8.0e-08 60.5 63 46.0
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.0e-07 60.1 63 50.8
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.8e-07 59.3 45 60.0
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 1.8e-07 59.3 54 57.4
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 1.8e-07 59.3 54 57.4
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 1.8e-07 59.3 53 52.8
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 2.3e-07 58.9 55 56.4
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 2.3e-07 58.9 55 54.5
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 3.0e-07 58.5 53 49.1
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 3.0e-07 58.5 58 53.4
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 4.0e-07 58.2 63 47.6
PGSC0003DMG401018040 Solanum tuberosum HOM05D004017 ORTHO05D004612 4.0e-07 58.2 40 62.5
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 5.2e-07 57.8 58 53.4
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.5e-06 56.2 51 56.9
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 1.5e-06 56.2 57 42.1
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 1.5e-06 56.2 53 45.3
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 1.5e-06 56.2 53 45.3
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.0e-06 55.8 67 44.8
CDE06G0086 Ceratophyllum demersum HOM05D004017 ORTHO05D004612 3.4e-06 55.1 53 49.1
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 3.4e-06 55.1 53 47.2
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 5.7e-06 54.3 60 50.0
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 7.5e-06 53.9 51 51.0


User provided reference genes

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