Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.3e-100 369.0 201 100.0
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 5.9e-96 354.4 201 97.0
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.0e-92 342.0 201 93.0
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.7e-69 265.8 228 74.1
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.1e-65 251.9 210 76.7
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 6.6e-55 218.0 201 69.2
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 4.7e-45 185.3 199 59.8
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 2.3e-44 183.0 163 65.6
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.8e-44 181.4 176 61.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.4e-43 178.7 202 59.4
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.7e-42 176.8 166 61.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.2e-42 176.4 189 59.8
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 3.7e-42 175.6 198 57.6
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 8.3e-42 174.5 204 55.4
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.1e-41 174.1 205 57.1
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 4.1e-41 172.2 182 62.6
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 3.5e-40 169.1 162 63.0
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 3.5e-40 169.1 195 56.4
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.0e-39 167.5 162 62.3
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.7e-39 166.8 172 61.6
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.3e-39 166.4 163 60.7
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.3e-39 166.4 193 52.8
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 3.9e-39 165.6 194 57.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.9e-38 163.3 190 60.5
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.3e-38 162.5 167 56.9
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 4.3e-38 162.2 196 55.1
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 5.6e-38 161.8 173 60.7
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.6e-38 161.8 174 58.0
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.6e-37 160.2 187 57.2
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.1e-37 159.8 165 60.0
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 3.6e-37 159.1 164 56.7
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 3.6e-37 159.1 184 59.8
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.6e-37 159.1 171 56.1
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 4.7e-37 158.7 191 53.9
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 6.2e-37 158.3 200 48.0
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 6.2e-37 158.3 162 56.8
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 6.2e-37 158.3 164 59.1
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 8.1e-37 157.9 187 55.6
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 1.1e-36 157.5 162 59.9
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.1e-36 156.0 162 60.5
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 5.2e-36 155.2 190 52.1
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 6.8e-36 154.8 190 52.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.9e-36 154.5 162 52.5
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.5e-35 153.7 162 57.4
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.4e-35 152.5 166 56.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.4e-35 152.5 166 56.6
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 3.4e-35 152.5 166 57.8
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 4.4e-35 152.1 185 56.8
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 9.9e-35 151.0 170 53.5
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.3e-34 150.6 162 56.2
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 2.9e-34 149.4 146 64.4
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 2.9e-34 149.4 213 50.2
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 6.4e-34 148.3 163 57.7
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 6.4e-34 148.3 168 57.7
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 8.3e-34 147.9 164 57.3
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.1e-33 147.5 167 57.5
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.4e-33 147.1 194 50.5
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 1.9e-33 146.7 106 67.9
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.9e-33 146.7 195 54.4
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.9e-33 146.7 195 54.9
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 2.4e-33 146.4 206 51.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 4.1e-33 145.6 179 51.4
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.4e-33 145.2 209 48.8
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-32 143.3 163 55.2
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 2.1e-32 143.3 163 54.0
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 4.6e-32 142.1 165 56.4
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 4.6e-32 142.1 165 56.4
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 7.8e-32 141.4 212 47.6
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.0e-31 141.0 149 58.4
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.0e-31 139.4 110 62.7
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 3.0e-31 139.4 110 62.7
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 3.0e-31 139.4 110 62.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.5e-30 137.1 158 54.4
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.9e-30 136.7 193 50.8
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 3.3e-30 136.0 202 51.0
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 7.3e-30 134.8 106 61.3
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 7.3e-30 134.8 157 51.0
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.1e-29 133.3 106 62.3
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.1e-29 133.3 202 42.1
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 4.7e-29 132.1 167 54.5
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 5.2e-28 128.6 260 41.9
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.0e-27 126.7 162 56.2
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 7.6e-27 124.8 191 47.1
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.0e-23 114.4 92 58.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.5e-22 109.8 99 58.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.3e-22 109.4 130 46.2
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 3.6e-21 105.9 248 39.9
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 4.7e-21 105.5 108 51.9
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.1e-20 104.4 162 43.8
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.8e-20 103.6 89 56.2
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.8e-20 103.6 89 56.2
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.4e-20 103.2 89 58.4
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 4.0e-20 102.4 89 56.2
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 6.9e-20 101.7 74 67.6
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 6.9e-20 101.7 89 55.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 6.9e-20 101.7 87 60.9
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 6.9e-20 101.7 89 58.4
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 9.0e-20 101.3 88 55.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 9.0e-20 101.3 88 55.7
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.2e-19 100.9 108 50.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.2e-19 100.9 108 49.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.2e-19 100.9 89 55.1
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.2e-19 100.9 89 55.1
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.5e-19 100.5 182 38.5
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.6e-19 99.8 108 47.2
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 3.4e-19 99.4 73 65.8
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.4e-19 99.4 87 54.0
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 3.4e-19 99.4 108 46.3
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 4.4e-19 99.0 95 53.7
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 4.4e-19 99.0 108 50.0
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.8e-19 98.6 89 51.7
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 9.9e-19 97.8 143 51.7
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 9.9e-19 97.8 109 49.5
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.3e-18 97.4 108 48.1
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.7e-18 97.1 89 51.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.7e-18 97.1 89 55.1
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.7e-18 97.1 89 51.7
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.2e-18 96.7 89 51.7
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 2.2e-18 96.7 108 46.3
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.2e-18 96.7 74 64.9
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 2.9e-18 96.3 89 53.9
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.9e-18 96.3 108 47.2
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 2.9e-18 96.3 108 43.5
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 4.9e-18 95.5 148 45.3
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 4.9e-18 95.5 125 58.4
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 4.9e-18 95.5 89 53.9
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.1e-17 94.4 89 50.6
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.1e-17 94.4 89 50.6
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 1.9e-17 93.6 89 52.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 1.9e-17 93.6 89 52.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 1.9e-17 93.6 89 52.8
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.4e-17 93.2 90 51.1
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-17 92.4 89 52.8
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 7.1e-17 91.7 122 55.7
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 9.3e-17 91.3 163 35.6
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.6e-16 90.5 89 51.7
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.6e-16 90.5 132 41.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.7e-16 89.7 89 50.6
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.6e-16 89.0 110 54.5
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 6.0e-16 88.6 89 47.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.3e-15 87.4 167 33.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.3e-15 87.4 89 47.2
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.7e-15 87.0 89 47.2
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.7e-15 87.0 78 56.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.3e-15 86.7 89 47.2
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 6.6e-15 85.1 89 46.1
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.7e-15 84.7 131 44.3
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.5e-14 83.2 60 66.7
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 4.3e-14 82.4 180 31.1
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.6e-13 80.5 92 48.9
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 2.1e-13 80.1 59 66.1
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.6e-13 79.3 108 41.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 9.9e-11 71.2 85 32.9
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 1.7e-10 70.5 111 54.1
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 2.9e-10 69.7 91 46.2
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 4.9e-10 68.9 79 46.8
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.9e-09 67.0 99 39.4
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 5.4e-09 65.5 65 53.8
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 2.7e-08 63.2 89 52.8
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 7.9e-08 61.6 108 34.3
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 1.0e-07 61.2 102 48.0
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 6.7e-07 58.5 54 53.7
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.5e-06 57.4 94 39.4
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 7.4e-06 55.1 49 53.1


User provided reference genes

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