Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 5.4e-159 564.3 288 100.0
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.3e-157 559.7 288 99.3
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.1e-155 552.4 288 97.9
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.1e-139 499.2 289 87.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 3.2e-135 485.3 285 87.0
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 7.0e-135 484.2 285 86.0
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 6.8e-130 467.6 288 83.0
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.2e-97 360.5 217 82.0
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 3.2e-95 352.4 220 81.8
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.2e-95 352.4 218 80.7
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.2e-94 350.5 257 69.3
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.2e-94 350.5 243 73.3
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.2e-94 350.5 216 79.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 7.9e-94 347.8 215 80.0
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 7.9e-94 347.8 218 79.4
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 7.9e-94 347.8 220 79.5
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.3e-93 347.1 233 74.7
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.3e-93 347.1 216 80.6
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.3e-93 347.1 216 80.6
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.3e-93 347.1 217 77.9
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 5.1e-93 345.1 217 78.3
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 5.1e-93 345.1 234 72.6
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 6.7e-93 344.7 219 79.9
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 8.7e-93 344.4 218 78.4
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.5e-92 343.6 232 75.0
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.5e-92 343.6 217 78.8
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.5e-92 343.6 218 79.4
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.5e-92 342.8 215 79.1
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 4.3e-92 342.0 217 78.8
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 7.4e-92 341.3 217 80.2
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 9.6e-92 340.9 227 74.4
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 9.6e-92 340.9 219 77.2
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.6e-91 340.1 277 64.6
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.6e-91 340.1 218 78.4
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.1e-91 339.7 218 77.1
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.1e-91 339.7 216 78.7
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 2.1e-91 339.7 220 79.5
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 2.8e-91 339.3 217 79.3
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 2.8e-91 339.3 217 77.4
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 4.8e-91 338.6 219 79.0
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 6.2e-91 338.2 218 77.5
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 8.1e-91 337.8 218 76.1
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 8.1e-91 337.8 217 79.7
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.8e-90 336.7 207 80.2
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 3.1e-90 335.9 215 76.7
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.0e-90 335.5 271 64.9
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 5.3e-90 335.1 216 76.9
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 1.2e-89 334.0 218 77.1
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.5e-89 333.6 217 77.4
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 2.0e-89 333.2 256 68.4
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.0e-89 333.2 213 77.5
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 2.0e-89 333.2 256 68.4
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.4e-89 332.4 220 75.5
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 4.5e-89 332.0 292 61.3
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.5e-89 332.0 233 72.1
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 5.8e-89 331.6 215 77.7
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.0e-88 330.9 221 76.0
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.0e-88 330.9 218 75.2
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.3e-88 330.5 247 69.6
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.7e-88 330.1 239 70.3
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.7e-88 330.1 235 71.5
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 3.8e-88 328.9 267 65.2
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 4.9e-88 328.6 256 67.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.9e-88 328.6 224 75.4
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 8.4e-88 327.8 216 75.9
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 8.4e-88 327.8 185 85.9
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 8.4e-88 327.8 223 73.5
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.1e-87 327.4 216 76.4
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.1e-87 327.4 220 75.0
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.1e-87 327.4 219 74.0
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.4e-87 327.0 220 75.0
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 2.5e-87 326.2 285 62.5
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 3.2e-87 325.9 219 74.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-87 325.5 215 75.3
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 4.2e-87 325.5 268 63.8
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 9.3e-87 324.3 267 65.2
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 9.3e-87 324.3 218 74.3
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.6e-86 323.6 211 75.4
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.6e-86 323.6 211 74.9
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.6e-86 323.6 215 74.9
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.7e-86 322.8 215 75.8
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 4.6e-86 322.0 216 74.1
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.0e-85 320.9 211 74.4
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.3e-85 320.5 205 76.6
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.3e-85 320.5 249 67.5
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.8e-85 320.1 216 75.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 2.3e-85 319.7 273 63.4
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 3.0e-85 319.3 273 61.9
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 5.1e-85 318.5 207 77.3
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 5.1e-85 318.5 212 75.9
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.1e-84 317.4 249 65.5
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.9e-84 316.6 214 74.3
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 4.3e-84 315.5 216 74.1
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 7.4e-84 314.7 217 74.2
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 9.6e-84 314.3 204 75.0
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.3e-83 313.9 208 74.5
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.6e-83 313.5 213 74.2
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 3.7e-83 312.4 220 68.6
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.1e-82 310.8 213 71.4
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.4e-82 310.5 216 73.6
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 5.3e-82 308.5 213 72.3
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.2e-81 307.4 178 83.1
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.5e-81 307.0 189 78.3
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 3.8e-80 302.4 248 64.5
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.5e-79 299.7 219 68.0
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 5.1e-77 292.0 214 69.2
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 7.4e-76 288.1 185 73.5
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.2e-73 280.8 230 60.9
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 9.4e-71 271.2 205 69.8
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 2.2e-67 260.0 236 57.2
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.8e-61 240.4 179 62.0
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.5e-55 220.7 175 60.0
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 3.1e-50 203.0 135 75.6
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.0e-48 198.0 149 65.1
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 4.0e-45 186.0 114 79.8
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 4.4e-44 182.6 219 45.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 2.2e-40 170.2 159 54.1
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.1e-23 114.8 155 38.1
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 2.1e-22 110.5 77 75.3
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.8e-20 102.4 75 73.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.1e-18 96.3 56 80.4
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 8.1e-14 82.0 61 67.2
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 2.3e-08 63.9 225 24.0
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 1.1e-07 61.6 175 24.0
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.9e-07 60.8 200 26.0
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 3.3e-07 60.1 175 25.7
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 4.3e-07 59.7 156 30.1
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 5.6e-07 59.3 199 25.6
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 7.3e-07 58.9 175 25.7
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 7.3e-07 58.9 201 25.9
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 9.5e-07 58.5 73 47.9
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.6e-06 57.8 207 23.7
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.6e-06 57.8 207 24.2
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.6e-06 57.8 127 28.3
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 1.6e-06 57.8 175 28.0
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.1e-06 57.4 147 29.3
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 2.8e-06 57.0 219 24.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.8e-06 57.0 75 44.0
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 2.8e-06 57.0 192 21.4
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 3.6e-06 56.6 159 24.5
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 3.6e-06 56.6 194 23.7
Phvul.007G010700 Phaseolus vulgaris HOM05D002933 ORTHO05D009221 3.6e-06 56.6 192 21.9
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 3.6e-06 56.6 74 50.0
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 3.6e-06 56.6 74 50.0
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 4.7e-06 56.2 197 23.9
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 4.7e-06 56.2 205 23.9
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 6.2e-06 55.8 201 21.9
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 6.2e-06 55.8 73 46.6
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 6.2e-06 55.8 73 46.6
arahy.Tifrunner.gnm1.ann1.I4CVDG Arachis hypogaea HOM05D002933 ORTHO05D009221 8.1e-06 55.5 216 20.8
arahy.Tifrunner.gnm1.ann1.PIZC5V Arachis hypogaea HOM05D002933 ORTHO05D009221 8.1e-06 55.5 216 20.8
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 8.1e-06 55.5 175 23.4


User provided reference genes

Program Settings