Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g046370 Solanum pennellii HOM05D002874 ORTHO05D003250 7.5e-61 236.9 111 100.0
Solyc01g103970.4 Solanum lycopersicum HOM05D002874 ORTHO05D003250 2.8e-31 138.7 64 98.4
PGSC0003DMG400023801 Solanum tuberosum HOM05D002874 ORTHO05D003250 3.4e-29 131.7 64 95.3
Nitab4.5_0001744g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.4e-19 99.8 62 74.2
Peaxi162Scf00003g03946 Petunia axillaris HOM05D002874 ORTHO05D003250 1.4e-19 99.8 108 50.0
CAN.G11.39 Capsicum annuum HOM05D002874 ORTHO05D003250 1.3e-17 93.2 116 44.8
Nitab4.5_0008061g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.1e-16 90.1 64 68.8
Nitab4.5_0007966g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 7.4e-16 87.4 64 65.6
Nitab4.5_0008546g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.6e-15 86.3 51 72.5
SGA_v2.0_scaffold338G49216 Striga asiatica HOM05D002874 ORTHO05D003250 1.6e-10 69.7 96 36.5
HanXRQChr03g0065221 Helianthus annuus HOM05D002874 ORTHO05D003250 6.7e-09 64.3 56 58.9
Lj5A254T89 Lonicera japonica HOM05D002874 ORTHO05D003250 1.5e-08 63.2 56 58.9
Manes.15G142950 Manihot esculenta HOM05D002874 ORTHO05D003250 5.7e-08 61.2 83 43.4
Migut.B00815 Erythranthe guttata HOM05D002874 ORTHO05D003250 9.7e-08 60.5 104 37.5
MSTRG.16509 Avicennia marina HOM05D002874 ORTHO05D003250 1.3e-07 60.1 104 36.5
A03p62460 Brassica napus HOM05D002874 ORTHO05D003250 1.3e-07 60.1 64 45.3
Thhalv10026077m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 1.3e-07 60.1 64 46.9
BraA03t15313Z Brassica rapa HOM05D002874 ORTHO05D003250 1.7e-07 59.7 64 45.3
AT4G33940 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 2.8e-07 58.9 63 46.0
CSS0033986 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 2.8e-07 58.9 59 49.2
AL7G17480 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 4.8e-07 58.2 63 46.0
COL.COLO4_11715 Corchorus olitorius HOM05D002874 ORTHO05D003250 4.8e-07 58.2 58 51.7
Gohir.D13G036400 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.8e-07 58.2 60 50.0
Gorai.013G041100 Gossypium raimondii HOM05D002874 ORTHO05D003250 4.8e-07 58.2 60 50.0
Gohir.A13G038000 Gossypium hirsutum HOM05D002874 ORTHO05D003250 8.2e-07 57.4 60 48.3
Thecc.02G096400 Theobroma cacao HOM05D002874 ORTHO05D003250 8.2e-07 57.4 60 50.0
Dinv24303 Davidia involucrata HOM05D002874 ORTHO05D003250 1.1e-06 57.0 56 55.4
THA.LOC104807351 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 1.1e-06 57.0 56 51.8
Atru.chr5.2783 Acer truncatum HOM05D002874 ORTHO05D003250 1.8e-06 56.2 56 53.6
Atru.chr5.2798 Acer truncatum HOM05D002874 ORTHO05D003250 1.8e-06 56.2 56 53.6
BcaNung02905 Brassica carinata HOM05D002874 ORTHO05D003250 1.8e-06 56.2 64 45.3
C07p60060 Brassica napus HOM05D002874 ORTHO05D003250 1.8e-06 56.2 64 45.3
BcaNung04335 Brassica carinata HOM05D002874 ORTHO05D003250 4.1e-06 55.1 56 50.0
Ciclev10029827m.g Citrus clementina HOM05D002874 ORTHO05D003250 4.1e-06 55.1 54 53.7
Rhsim05G0106200 Rhododendron simsii HOM05D002874 ORTHO05D003250 4.1e-06 55.1 58 51.7
Sp7g31670 Schrenkiella parvula HOM05D002874 ORTHO05D003250 4.1e-06 55.1 64 43.8
Carub.0007s0648 Capsella rubella HOM05D002874 ORTHO05D003250 5.3e-06 54.7 60 46.7
Gohir.D01G006200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 5.3e-06 54.7 60 46.7
Gorai.002G007200 Gossypium raimondii HOM05D002874 ORTHO05D003250 5.3e-06 54.7 60 46.7
Rhsim11G0127600 Rhododendron simsii HOM05D002874 ORTHO05D003250 5.3e-06 54.7 57 47.4
A01p04460 Brassica napus HOM05D002874 ORTHO05D003250 6.9e-06 54.3 64 42.2
C01p04850 Brassica napus HOM05D002874 ORTHO05D003250 6.9e-06 54.3 64 42.2
BolC1t00469H Brassica oleracea HOM05D002874 ORTHO05D003250 6.9e-06 54.3 64 42.2
BraA01t00433Z Brassica rapa HOM05D002874 ORTHO05D003250 6.9e-06 54.3 64 42.2


User provided reference genes

Program Settings