Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 7.2e-184 647.1 332 100.0
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 1.7e-177 625.9 326 98.5
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 2.8e-175 618.6 327 97.6
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 1.6e-167 592.8 326 92.3
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 3.5e-162 575.1 326 91.4
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.4e-157 558.1 311 92.3
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.4e-150 536.6 311 89.1
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 7.6e-149 530.8 326 83.1
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 6.9e-126 454.5 326 74.8
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.0e-125 453.0 326 72.1
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 5.8e-125 451.4 326 73.6
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 1.3e-124 450.3 331 73.4
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 6.4e-124 448.0 329 72.6
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.9e-123 446.4 326 73.0
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.9e-123 446.4 326 71.8
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.1e-122 443.0 326 73.6
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 6.0e-122 441.4 326 73.0
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.0e-121 440.7 326 72.7
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.0e-121 440.7 328 72.0
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.0e-121 440.7 326 73.6
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 3.0e-121 439.1 326 71.5
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 8.7e-121 437.6 328 72.3
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.5e-120 436.8 326 71.2
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.9e-120 436.4 326 70.9
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.9e-120 436.4 326 72.4
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 2.5e-120 436.0 303 74.9
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 2.8e-119 432.6 329 71.1
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.1e-118 430.6 301 75.7
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.4e-118 430.3 324 71.9
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 4.0e-118 428.7 326 71.2
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 6.9e-118 427.9 327 68.8
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 1.2e-117 427.2 271 80.4
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 1.5e-117 426.8 328 69.8
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 2.6e-117 426.0 327 70.9
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 2.6e-117 426.0 329 70.2
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.4e-117 425.6 327 70.9
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 5.8e-117 424.9 288 77.4
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 7.6e-117 424.5 326 70.2
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.0e-116 424.1 282 78.0
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.0e-116 424.1 327 68.8
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.7e-116 423.3 328 69.5
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 1.7e-116 423.3 292 76.4
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 2.9e-116 422.5 339 69.0
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 6.5e-116 421.4 326 68.7
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 6.5e-116 421.4 328 69.2
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 1.9e-115 419.9 302 73.5
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.2e-115 419.1 326 69.3
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 4.2e-115 418.7 326 68.7
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.1e-115 417.9 260 83.8
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.1e-114 416.4 268 80.6
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 4.6e-114 415.2 290 73.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 4.6e-114 415.2 327 67.6
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.0e-113 414.1 327 69.1
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.8e-113 413.3 275 77.5
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 2.3e-113 412.9 277 76.9
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.3e-113 412.9 276 77.2
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 3.0e-113 412.5 261 79.3
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 3.0e-113 412.5 339 67.3
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 5.1e-113 411.8 269 77.3
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 5.1e-113 411.8 292 72.9
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 6.7e-113 411.4 328 68.6
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 8.7e-113 411.0 269 77.0
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 8.7e-113 411.0 321 69.5
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 1.5e-112 410.2 295 71.5
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 1.5e-112 410.2 295 71.5
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 1.5e-112 410.2 269 80.3
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 3.3e-112 409.1 295 71.2
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 4.3e-112 408.7 269 76.6
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 5.7e-112 408.3 268 78.0
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 1.6e-111 406.8 269 77.0
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 2.2e-111 406.4 273 76.6
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.8e-111 406.0 267 79.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 2.8e-111 406.0 269 76.6
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.8e-111 406.0 270 77.0
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 1.4e-110 403.7 276 75.4
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 2.6e-109 399.4 263 77.6
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 5.9e-109 398.3 329 65.7
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.9e-107 393.3 329 64.4
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 3.2e-107 392.5 326 66.6
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 9.3e-107 391.0 328 64.9
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 2.1e-106 389.8 225 88.0
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.3e-105 387.1 272 74.3
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.5e-104 382.9 328 65.9
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 4.3e-104 382.1 326 65.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 5.7e-104 381.7 222 86.9
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 4.8e-103 378.6 326 64.7
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.8e-103 378.6 326 63.2
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.4e-102 377.1 326 62.9
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.4e-102 376.3 269 75.1
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.3e-102 375.2 326 63.2
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.9e-102 374.8 326 62.6
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 6.9e-102 374.8 326 64.7
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 9.1e-102 374.4 269 74.3
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 9.1e-102 374.4 326 62.3
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 7.7e-101 371.3 328 61.9
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 3.8e-100 369.0 326 61.3
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 1.1e-99 367.5 326 60.1
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 4.2e-99 365.5 206 91.3
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.4e-97 360.5 289 66.4
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.4e-97 360.5 258 71.3
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 3.0e-97 359.4 342 61.7
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 5.7e-96 355.1 288 67.4
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 7.4e-96 354.8 326 59.8
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.2e-93 347.4 277 67.9
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.5e-93 347.1 268 67.2
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 2.6e-93 346.3 226 75.2
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 3.4e-93 345.9 263 69.2
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 3.4e-93 345.9 277 67.5
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 5.9e-93 345.1 266 68.8
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 1.0e-92 344.4 312 59.6
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 1.1e-91 340.9 252 70.2
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.5e-91 339.7 326 58.3
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 7.2e-91 338.2 225 75.1
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 9.4e-91 337.8 228 73.7
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.6e-90 335.9 326 58.9
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 8.8e-89 331.3 264 64.0
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 3.1e-86 322.8 269 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 6.5e-84 315.1 213 75.6
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 8.0e-82 308.1 227 73.6
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 5.2e-81 305.4 166 96.4
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 9.7e-80 301.2 222 70.7
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 1.2e-77 294.3 220 65.5
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.6e-77 293.9 283 55.5
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 3.2e-75 286.2 272 62.5
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 3.1e-70 269.6 185 74.6
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 4.2e-67 259.2 224 58.9
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 2.2e-55 220.3 156 77.6
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 5.0e-44 182.6 118 72.9
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.3e-36 157.1 122 65.6
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.5e-32 144.4 110 63.6
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.8e-25 120.9 67 91.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 6.9e-25 119.0 232 40.1
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 1.2e-21 108.2 67 80.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 1.2e-21 108.2 67 80.6
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 3.3e-19 100.1 189 32.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.0e-12 77.0 43 81.4


User provided reference genes

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