Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 3.7e-147 525.4 392 100.0
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.9e-139 499.2 392 94.1
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 6.7e-128 461.5 392 90.1
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 7.4e-127 458.0 392 90.1
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 2.1e-126 456.4 392 89.8
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.2e-121 440.7 392 87.8
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 9.6e-111 404.4 390 82.1
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 5.9e-108 395.2 403 79.7
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.0e-107 394.4 399 79.9
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.7e-107 393.7 400 77.0
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 2.2e-107 393.3 402 81.8
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.9e-106 390.2 400 79.0
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 2.5e-106 389.8 396 79.8
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.5e-106 389.8 402 77.6
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 4.2e-106 389.0 402 81.3
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 6.1e-105 385.2 397 78.3
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.1e-105 385.2 402 75.4
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 6.1e-105 385.2 402 75.4
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.3e-104 384.0 399 79.4
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.3e-104 384.0 399 79.4
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.3e-104 384.0 401 77.8
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.3e-104 383.3 384 75.0
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 5.1e-104 382.1 393 81.4
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.1e-103 380.9 403 74.7
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.5e-103 380.6 407 77.6
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.5e-103 379.8 402 77.6
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.5e-103 379.8 402 77.4
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.5e-103 379.8 405 74.8
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 2.5e-103 379.8 401 76.3
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 4.3e-103 379.0 225 84.4
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 4.3e-103 379.0 223 82.5
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 5.7e-103 378.6 393 70.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 9.7e-103 377.9 223 81.6
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 1.3e-102 377.5 223 81.6
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.3e-102 377.5 393 81.2
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.2e-102 376.7 225 81.8
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 2.2e-102 376.7 406 78.3
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 3.7e-102 375.9 223 82.1
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 6.3e-102 375.2 222 85.6
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.4e-101 374.0 401 75.8
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.4e-101 374.0 221 81.9
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.8e-101 373.6 404 80.4
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 9.1e-101 371.3 421 75.8
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.2e-100 370.9 401 73.8
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 1.2e-100 370.9 391 80.8
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 1.5e-100 370.5 226 83.2
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.6e-100 369.8 222 84.2
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 4.5e-100 369.0 404 77.5
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 5.9e-100 368.6 401 73.8
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 5.9e-100 368.6 391 81.1
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.3e-99 367.5 222 84.2
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.3e-99 367.5 391 75.2
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.3e-99 367.5 391 78.5
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.3e-99 367.5 393 79.4
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.7e-99 367.1 393 80.2
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.2e-99 366.7 426 69.0
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 2.9e-99 366.3 417 64.0
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 3.8e-99 365.9 222 80.6
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 3.8e-99 365.9 221 84.2
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 3.8e-99 365.9 221 84.2
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.8e-99 365.9 239 77.4
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 5.0e-99 365.5 401 77.8
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.1e-98 364.4 402 77.4
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 9.4e-98 361.3 398 79.6
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 1.2e-97 360.9 397 80.9
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.6e-97 360.5 395 79.5
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 3.6e-97 359.4 222 81.1
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 4.6e-97 359.0 393 81.2
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 6.1e-97 358.6 392 77.3
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.0e-96 357.8 414 70.5
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.8e-96 357.1 401 76.8
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.8e-96 357.1 397 75.8
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.3e-96 356.7 222 79.3
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-95 354.0 214 79.4
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-95 354.0 220 78.6
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-95 354.0 220 78.6
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.5e-95 354.0 220 78.6
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.0e-95 353.6 446 72.2
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 2.0e-95 353.6 190 89.5
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.0e-95 353.6 215 82.3
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.0e-95 353.6 215 82.3
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 2.6e-95 353.2 190 88.4
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 2.6e-95 353.2 443 73.4
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 4.4e-95 352.4 190 87.9
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 7.4e-95 351.7 190 88.4
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 7.4e-95 351.7 190 88.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 7.4e-95 351.7 221 79.2
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 4.8e-94 349.0 190 83.7
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 8.2e-94 348.2 190 83.7
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 8.2e-94 348.2 190 83.2
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 1.8e-93 347.1 190 83.2
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 3.1e-93 346.3 190 83.2
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 82.1
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.5e-92 344.0 190 84.2
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 2.9e-91 339.7 190 83.2
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 8.5e-91 338.2 190 82.6
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.4e-90 337.4 190 82.6
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 3.2e-90 336.3 191 82.7
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 5.5e-90 335.5 226 73.9
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 7.2e-90 335.1 190 82.1
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.6e-89 334.0 402 55.5
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-88 331.3 213 73.2
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-88 331.3 197 79.7
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.0e-88 331.3 369 80.5
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 8.8e-88 328.2 517 59.0
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 9.7e-87 324.7 190 78.4
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.7e-86 322.8 211 73.9
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 6.3e-86 322.0 218 71.6
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 8.2e-86 321.6 190 80.0
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 2.4e-85 320.1 167 89.2
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-84 317.0 190 77.9
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.9e-83 313.2 398 53.3
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 5.0e-83 312.4 559 54.6
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.1e-81 307.0 397 49.9
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 5.7e-79 298.9 222 73.9
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 2.8e-78 296.6 390 64.9
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 4.0e-72 276.2 388 46.6
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 8.3e-70 268.5 190 62.6
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 6.8e-56 222.2 185 55.1
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.9e-54 216.9 184 54.9
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 5.6e-50 202.6 238 47.1
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 8.9e-48 195.3 338 67.5
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.3e-46 191.4 97 91.8
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 1.3e-43 181.4 164 61.6
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 4.3e-42 176.4 308 62.3
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 9.5e-42 175.3 94 86.2
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 1.1e-24 118.6 89 75.3
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 5.2e-24 116.3 70 74.3
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 5.2e-24 116.3 70 74.3
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 9.0e-24 115.5 90 61.1
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 4.2e-13 80.1 53 62.3
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 7.1e-13 79.3 57 63.2
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 5.1e-11 73.2 68 55.9
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 2.8e-09 67.4 42 76.2
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 2.4e-08 64.3 54 74.1
ATR0693G087 Amborella trichopoda HOM05D005421 ORTHO05D026565 3.4e-07 60.5 59 67.8
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 1.3e-06 58.5 28 96.4


User provided reference genes

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