Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 2053.1 970 100.0
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 2030.4 970 98.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1994.5 970 97.3
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1887.5 969 92.0
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1872.4 968 90.5
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1766.1 954 88.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 955 80.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1643.2 968 79.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1635.9 973 78.3
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 974 79.2
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1622.4 969 78.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1622.4 969 77.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1621.3 969 78.0
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1619.4 969 77.2
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1617.8 973 77.2
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 972 77.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 971 76.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 971 77.7
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1612.8 970 77.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1609.7 971 77.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 973 77.7
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 971 77.2
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 968 76.8
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1603.6 972 76.7
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 987 76.0
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1597.4 973 77.2
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1597.0 973 76.8
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1597.0 973 76.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 970 76.5
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 973 77.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1587.8 973 76.7
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 976 75.7
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1580.8 969 75.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1579.7 979 75.2
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 975 76.4
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 971 76.1
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1573.1 974 75.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 969 74.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 971 75.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 965 76.0
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 972 74.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1556.6 971 74.4
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 966 75.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 971 73.6
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 967 74.6
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1553.5 971 75.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 980 74.3
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 964 74.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 974 74.3
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1550.0 971 73.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1547.3 969 74.7
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 962 74.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1546.6 966 74.2
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 971 73.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 967 74.4
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 970 73.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1540.8 972 74.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 974 74.1
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 963 74.0
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1538.5 969 75.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 971 73.8
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 968 74.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 973 73.5
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 987 71.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 973 73.3
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1533.9 944 76.0
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 966 73.7
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 976 73.0
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 966 73.5
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 969 74.3
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 977 73.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 971 72.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1526.5 971 73.6
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 977 73.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 961 73.8
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1523.1 962 73.3
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 978 72.1
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1521.1 982 71.8
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1519.6 963 73.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1517.7 973 72.6
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 950 74.3
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1513.4 976 72.6
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1511.5 976 73.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 978 71.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 970 72.5
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 974 72.6
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 925 75.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1494.2 891 78.2
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1489.9 968 72.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 969 71.9
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1478.8 970 72.0
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 975 71.2
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 965 70.3
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1461.0 974 70.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 968 69.6
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1445.3 970 70.5
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1441.4 998 70.5
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 971 70.1
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 972 70.1
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 972 70.1
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1426.4 971 69.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1425.2 979 68.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1425.2 974 68.9
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1422.5 986 68.8
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1419.4 880 75.6
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 974 69.2
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1416.4 971 68.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1415.6 971 69.3
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1399.0 968 68.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 969 69.3
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1395.2 968 68.0
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1386.3 851 76.5
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1383.6 854 75.8
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1383.2 968 67.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1378.6 968 67.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1376.7 971 68.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1372.5 1000 65.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1372.5 974 67.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1331.6 762 78.9
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1308.5 972 66.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1307.4 969 65.0
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1293.1 975 65.4
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1247.3 787 74.3
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1241.9 849 69.1
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1230.3 770 75.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1203.3 788 71.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1194.9 780 72.2
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1099.3 976 55.9
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1089.3 561 91.8
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 5.7e-306 1054.3 963 54.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.2e-304 1048.5 681 71.5
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 3.7e-289 998.4 717 68.1
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.2e-284 983.4 971 52.4
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.3e-269 932.2 972 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.8e-267 926.4 961 49.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 8.2e-236 821.2 838 50.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.2e-231 807.4 403 91.6
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.7e-154 550.4 373 76.7
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.4e-134 485.0 279 78.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.0e-116 425.6 413 55.2
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-113 414.8 343 59.5
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-99 369.0 213 77.9
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 2.6e-88 331.3 187 79.1
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.4e-88 330.9 210 70.0
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-83 315.5 275 57.5
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-76 292.4 159 82.4
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.3e-73 281.6 209 65.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-66 259.2 143 79.0
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.0e-64 251.9 156 72.4
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 5.8e-64 250.4 730 29.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 9.9e-56 223.0 150 76.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 5.6e-51 207.2 376 37.8
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.5e-45 188.0 780 26.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.3e-43 181.0 96 82.3
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-41 176.0 150 58.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-38 165.6 86 84.9
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.9e-35 155.6 149 53.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.0e-33 146.7 88 77.3
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.6e-32 145.2 160 47.5
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.9e-30 139.0 93 68.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 5.1e-28 131.0 99 64.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-22 111.7 183 36.1
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.8e-20 105.9 184 34.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 3.3e-19 101.7 114 50.0
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.6e-18 99.4 304 28.0
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.8e-18 98.6 120 47.5
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 6.2e-18 97.4 127 43.3
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.6e-13 82.8 46 76.1
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.7e-13 82.0 76 56.6
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 4.8e-10 71.2 71 52.1
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 6.9e-09 67.4 78 46.2
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 6.9e-09 67.4 43 74.4
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.1e-06 60.1 46 60.9


User provided reference genes

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