Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 3.2e-137 491.9 271 100.0
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 3.4e-99 365.5 207 98.1
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 2.9e-98 362.5 207 97.1
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 1.8e-84 316.6 204 86.3
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.0e-82 310.8 209 85.2
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 6.1e-80 301.6 209 85.6
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 2.6e-70 269.6 204 72.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 8.2e-69 264.6 240 60.8
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 9.1e-68 261.2 212 65.1
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.0e-67 260.0 208 68.3
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 5.0e-66 255.4 217 65.4
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 9.4e-65 251.1 207 65.7
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.8e-63 246.9 202 71.3
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 2.6e-62 243.0 208 71.2
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 3.4e-62 242.7 208 65.9
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.3e-61 240.7 214 65.0
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.2e-61 240.0 212 64.2
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 2.2e-61 240.0 198 70.2
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 2.8e-61 239.6 208 63.9
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 1.2e-59 234.2 223 61.4
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.6e-59 233.8 206 62.1
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 1.6e-59 233.8 210 61.0
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 3.5e-59 232.6 207 61.8
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 4.5e-59 232.3 207 61.8
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 7.7e-59 231.5 216 67.1
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 7.7e-59 231.5 208 62.5
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.3e-58 230.7 208 68.3
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.5e-57 227.3 206 64.1
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.9e-57 226.9 208 62.5
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.9e-57 226.9 207 62.8
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 5.5e-57 225.3 218 62.8
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 5.5e-57 225.3 217 62.7
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 5.5e-57 225.3 206 65.0
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 7.2e-57 224.9 206 62.6
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.6e-56 223.8 207 64.3
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.6e-56 223.8 211 60.2
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 2.1e-56 223.4 207 65.2
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.1e-56 223.4 148 73.0
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.6e-56 222.6 208 59.6
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.7e-56 222.2 208 59.6
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.4e-55 220.7 207 59.9
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.4e-55 220.7 217 62.7
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.8e-55 220.3 207 59.4
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.8e-55 220.3 220 67.3
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.0e-55 219.5 207 59.4
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 3.0e-55 219.5 210 59.0
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 6.8e-55 218.4 217 65.0
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 6.8e-55 218.4 208 61.1
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.0e-54 216.9 210 59.5
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.6e-54 216.5 214 63.1
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 4.4e-54 215.7 210 61.0
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 4.4e-54 215.7 213 63.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 9.8e-54 214.5 207 57.5
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.7e-53 213.8 210 59.0
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 2.8e-53 213.0 207 57.5
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 3.7e-53 212.6 149 69.8
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 3.7e-53 212.6 210 59.0
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 8.3e-53 211.5 208 57.2
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 8.3e-53 211.5 209 61.2
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.1e-52 211.1 205 58.5
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.1e-52 211.1 208 56.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 4.1e-52 209.1 247 51.4
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 4.1e-52 209.1 206 65.0
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 7.0e-52 208.4 208 58.2
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 7.0e-52 208.4 225 54.2
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 9.2e-52 208.0 114 85.1
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.6e-51 207.2 207 57.0
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.6e-51 207.2 113 82.3
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.6e-51 207.2 209 60.8
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.0e-51 206.8 179 64.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.7e-51 206.5 147 78.2
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.5e-51 206.1 200 58.0
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 3.5e-51 206.1 208 56.7
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.0e-50 204.5 114 83.3
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.9e-50 203.0 207 55.1
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.9e-50 203.0 201 57.2
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 2.9e-50 203.0 201 57.2
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 2.9e-50 203.0 203 55.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.8e-50 202.6 200 56.0
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 8.6e-50 201.4 181 61.3
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 8.6e-50 201.4 202 56.4
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.1e-49 201.1 114 81.6
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.5e-49 200.7 208 54.8
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.9e-49 200.3 181 59.7
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 4.3e-49 199.1 113 81.4
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 4.3e-49 199.1 113 77.9
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 5.6e-49 198.7 113 81.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 7.3e-49 198.4 113 81.4
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.2e-48 197.6 113 79.6
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.8e-48 196.4 195 62.1
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 3.6e-48 196.1 113 77.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 4.7e-48 195.7 111 82.0
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 6.1e-48 195.3 111 82.0
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 8.0e-48 194.9 111 82.0
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 8.0e-48 194.9 111 82.0
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 8.0e-48 194.9 111 82.0
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 8.0e-48 194.9 111 82.0
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 8.0e-48 194.9 111 82.0
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.0e-47 194.5 148 75.0
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 1.0e-47 194.5 111 81.1
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.8e-47 193.7 208 53.8
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 2.3e-47 193.4 163 65.0
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 2.4e-44 183.3 154 66.9
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 5.4e-44 182.2 184 62.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 5.4e-44 182.2 206 51.5
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 1.2e-43 181.0 194 56.2
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 4.6e-43 179.1 180 54.4
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.7e-42 177.2 167 53.3
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.9e-42 176.0 114 73.7
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 6.6e-42 175.3 185 54.6
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-41 173.7 111 72.1
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 4.3e-41 172.6 107 73.8
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 9.5e-41 171.4 177 61.0
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.5e-41 171.4 154 66.9
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 9.5e-41 171.4 109 75.2
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 2.3e-39 166.8 113 67.3
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.3e-39 166.8 109 73.4
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 3.1e-39 166.4 108 70.4
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.5e-38 164.1 111 69.4
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.0e-38 163.7 109 66.1
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 1.1e-36 157.9 119 63.0
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 9.2e-36 154.8 179 54.2
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 5.4e-28 129.0 109 54.1
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.7e-27 126.7 110 51.8
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 7.6e-22 108.6 108 50.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 2.2e-21 107.1 79 55.7
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.8e-15 87.4 90 48.9
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 3.1e-07 60.1 122 36.9


User provided reference genes

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