Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 3256.8 1692 100.0
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 3246.8 1692 99.5
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 3011.5 1698 91.3
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2677.1 1703 83.1
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2442.5 1727 73.7
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2363.6 1692 73.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2358.6 1724 71.8
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2342.4 1738 71.2
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2340.5 1731 71.2
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2332.8 1766 70.0
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2329.3 1699 72.0
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2318.9 1735 70.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2316.6 1719 71.3
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2313.5 1737 70.4
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2312.7 1736 70.5
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2310.0 1733 70.0
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2275.4 1732 70.0
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2273.8 1698 70.1
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2271.9 1721 69.7
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2270.7 1741 68.7
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2269.2 1725 69.7
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2265.3 1734 69.8
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2263.8 1720 69.1
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2262.6 1735 69.2
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2261.1 1736 69.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2256.9 1724 69.8
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2254.9 1732 68.7
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2252.2 1728 68.8
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2251.1 1725 69.3
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2249.6 1738 67.3
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2248.0 1792 67.4
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2247.2 1738 68.8
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2238.0 1722 69.0
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2229.9 1736 69.5
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2226.1 1722 68.8
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2225.7 1728 67.6
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2224.9 1736 68.3
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2208.3 1691 69.1
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2206.0 1713 67.6
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2202.9 1739 68.7
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2202.2 1715 68.3
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2200.6 1732 67.7
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2196.8 1739 68.5
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2196.0 1737 68.9
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2192.9 1745 67.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2192.2 1771 66.5
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2191.8 1736 66.6
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2191.8 1738 66.7
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2191.8 1733 67.2
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2189.8 1733 66.7
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2189.5 1737 66.4
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2184.5 1741 67.1
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2177.5 1736 66.3
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2167.5 1736 66.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2166.0 1733 66.6
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2164.8 1734 67.2
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2157.5 1729 66.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2136.3 1728 65.2
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2124.7 1730 65.1
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2123.6 1711 66.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2116.7 1719 65.6
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2116.3 1710 66.3
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2110.5 1733 65.6
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2108.6 1718 65.8
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2108.6 1718 65.8
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2107.4 1725 65.2
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2106.3 1664 70.3
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2105.5 1709 65.8
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2103.6 1691 66.4
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2076.6 1705 65.8
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2072.0 1722 65.7
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2053.5 1732 64.8
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2048.1 1735 63.7
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2039.6 1723 64.1
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2031.1 1708 64.1
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2029.2 1700 65.2
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2020.4 1695 65.0
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2006.1 1706 63.2
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1966.8 1711 63.8
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 1954.5 1708 63.4
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1942.5 1695 63.5
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 1941.4 1707 63.2
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1931.4 1166 86.1
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1919.4 1720 61.7
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1919.1 1703 63.5
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1916.4 1711 62.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1915.2 1705 62.2
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1895.9 1698 62.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1895.2 1711 62.0
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1889.8 1696 61.7
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1867.0 1456 68.5
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1859.0 1764 57.8
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1848.6 1687 61.1
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1847.0 1687 61.0
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1846.2 1690 61.0
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1845.9 1730 58.6
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1845.5 1690 60.9
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1710.7 1693 54.9
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1681.0 1693 54.2
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1564.7 1253 66.7
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1559.3 1570 55.5
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1494.9 1364 61.9
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1461.4 1095 69.0
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1404.4 1453 57.1
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1401.0 1250 60.5
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1378.6 1241 60.3
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1342.0 1664 49.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1332.8 997 71.7
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1253.8 1381 53.7
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1253.0 1880 43.0
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1241.5 1151 61.7
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1199.1 1092 59.1
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1146.0 1728 42.5
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1143.6 1134 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1127.9 1817 40.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1092.8 1828 38.8
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 6.3e-308 1061.6 1873 37.7
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 2.0e-290 1003.4 1352 46.5
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 5.9e-266 922.2 479 97.3
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.5e-240 837.8 773 60.7
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.6e-210 738.0 1294 38.1
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 1.1e-208 731.9 533 72.2
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.1e-182 645.6 535 61.3
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 7.0e-182 642.9 489 71.4
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 2.3e-177 627.9 614 56.4
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 6.8e-169 599.7 616 54.5
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 1.3e-167 595.5 381 78.7
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 1.7e-159 568.5 337 84.3
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-150 539.3 531 55.7
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 4.3e-147 527.3 330 77.6
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.5e-144 518.8 366 72.1
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.7e-143 515.4 330 76.7
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 2.3e-140 505.0 325 75.1
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.0e-136 491.9 381 68.5
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 2.1e-133 481.9 475 57.9
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.4e-118 432.6 321 64.5
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-113 416.4 263 80.2
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 4.9e-111 407.5 267 80.5
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-97 362.1 398 52.5
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.3e-90 339.7 427 49.2
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 3.7e-82 311.6 304 60.9
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 6.3e-82 310.8 305 60.3
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 4.6e-77 294.7 304 58.2
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.2e-50 206.1 144 71.5
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.7e-23 116.7 141 44.7
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 8.6e-15 87.8 66 63.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.1e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.2e-11 77.4 361 24.1
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 2.6e-11 76.3 74 52.7
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 3.4e-11 75.9 74 52.7
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 3.8e-10 72.4 94 45.7
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.1e-09 70.9 186 32.3
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.0e-07 64.3 37 83.8


User provided reference genes

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