Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.1e-149 533.5 306 100.0
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 1.8e-128 463.0 310 86.1
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.3e-128 462.6 332 79.2
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 4.0e-104 382.1 253 72.3
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 9.6e-82 307.8 235 71.1
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 9.6e-82 307.8 235 65.1
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 8.7e-67 258.1 313 46.6
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.5e-63 247.3 307 48.5
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.0e-63 246.9 314 45.9
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 6.5e-62 241.9 315 45.1
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 1.1e-61 241.1 328 43.9
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 1.2e-60 237.7 313 43.8
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.3e-59 234.2 343 39.1
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.7e-57 226.1 253 46.6
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 8.2e-57 224.9 307 47.2
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 5.3e-56 222.2 263 45.6
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 2.0e-55 220.3 229 46.7
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.6e-55 219.9 245 47.3
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 3.4e-55 219.5 285 43.9
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 5.9e-55 218.8 276 43.5
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 5.9e-55 218.8 281 42.7
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 7.7e-55 218.4 240 45.0
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.0e-54 218.0 290 42.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 8.5e-54 214.9 242 45.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.4e-53 214.2 229 45.9
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.9e-53 213.8 282 44.3
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 9.4e-53 211.5 273 42.1
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 3.6e-52 209.5 283 40.6
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.0e-51 208.0 245 44.1
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.0e-51 208.0 227 51.1
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.8e-51 207.2 197 51.3
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 5.1e-51 205.7 243 44.4
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.5e-50 203.4 287 41.8
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 7.4e-50 201.8 184 51.6
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 9.7e-50 201.4 286 38.8
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.7e-49 200.7 231 48.1
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.7e-49 200.7 252 40.9
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.8e-49 199.9 296 40.2
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.8e-49 199.9 186 50.0
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 1.8e-48 197.2 235 46.0
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 3.1e-48 196.4 285 40.4
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.1e-48 196.4 285 40.4
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 3.1e-48 196.4 299 39.5
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 9.1e-48 194.9 281 41.3
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 2.0e-47 193.7 276 37.7
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.6e-44 184.1 254 39.8
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.0e-43 181.4 303 37.6
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 3.0e-43 179.9 150 53.3
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.3e-41 174.5 220 40.9
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.3e-38 164.5 278 36.0
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.6e-36 157.5 292 38.7
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.0e-34 150.6 292 37.7
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 2.2e-33 147.1 360 31.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 3.7e-33 146.4 318 33.0
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.8e-32 144.1 253 36.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.6e-28 129.8 97 55.7
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 1.4e-27 127.9 308 31.5
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 4.4e-26 122.9 213 34.7
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 9.8e-26 121.7 151 39.1
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.8e-25 120.2 149 41.6
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.1e-24 118.2 154 37.7
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.5e-23 113.2 139 40.3
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.5e-23 113.2 139 40.3
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.0e-22 111.7 144 40.3
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 1.3e-22 111.3 226 36.3
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.9e-21 107.5 142 37.3
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 3.2e-21 106.7 142 37.3
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 3.2e-21 106.7 142 37.3
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 3.2e-21 106.7 142 37.3
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.6e-20 103.2 146 38.4
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.0e-19 100.1 65 66.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 3.0e-19 100.1 65 66.2
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 3.0e-19 100.1 159 37.7
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 5.2e-19 99.4 140 38.6
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.2e-19 99.4 159 32.7
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 8.8e-19 98.6 133 39.8
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 8.8e-19 98.6 154 32.5
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.2e-18 98.2 144 34.7
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.5e-18 97.8 148 38.5
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 2.6e-18 97.1 140 38.6
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 4.4e-18 96.3 146 38.4
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 4.4e-18 96.3 156 36.5
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.7e-18 95.9 148 35.1
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 7.5e-18 95.5 156 32.1
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 9.8e-18 95.1 146 39.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 1.3e-17 94.7 146 37.7
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 1.3e-17 94.7 146 37.7
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.2e-17 94.0 148 31.8
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.2e-17 94.0 200 32.5
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 2.8e-17 93.6 146 38.4
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.8e-17 93.6 144 36.8
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 4.9e-17 92.8 210 30.0
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.4e-16 91.3 143 36.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.1e-16 90.1 174 32.8
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 4.1e-16 89.7 152 32.2
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.2e-15 88.2 144 35.4
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 1.2e-15 88.2 150 32.7
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 1.6e-15 87.8 150 32.7
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 2.0e-15 87.4 147 34.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 2.7e-15 87.0 147 34.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.7e-15 87.0 140 35.7
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.7e-15 85.5 143 32.9
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 7.7e-15 85.5 151 33.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.7e-14 84.3 210 27.6
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.8e-14 83.2 153 31.4
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 7.2e-13 79.0 150 31.3
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.8e-12 77.0 151 32.5
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 6.1e-12 75.9 151 28.5
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 6.1e-12 75.9 148 32.4
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.0e-11 75.1 149 33.6
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.0e-11 75.1 129 33.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.4e-11 74.7 87 37.9
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 3.0e-11 73.6 152 28.3
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 4.0e-11 73.2 156 30.1
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 4.0e-11 73.2 176 26.7
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.0e-10 70.9 210 29.5
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 4.4e-10 69.7 193 27.5
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.5e-10 68.9 156 26.9
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 9.8e-10 68.6 156 26.9
Gorai.001G196100 Gossypium raimondii HOM05D018961 ORTHO05D004072 3.7e-09 66.6 141 29.1
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 1.1e-08 65.1 142 33.8
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.2e-08 63.5 57 47.4
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.2e-08 63.5 141 28.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 7.0e-08 62.4 61 50.8
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 9.2e-08 62.0 158 25.9
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 2.0e-07 60.8 75 36.0
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.5e-07 60.1 60 46.7
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 5.9e-07 59.3 74 37.8
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 5.9e-07 59.3 106 39.6
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 1.0e-06 58.5 50 46.0
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.0e-06 58.5 50 46.0
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 1.0e-06 58.5 100 35.0
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.0e-06 58.5 59 44.1
VMungo1215G1066 Vigna mungo HOM05D008573 ORTHO05D009911 1.0e-06 58.5 54 50.0
VMungo0331G0323 Vigna mungo HOM05D008573 ORTHO05D009911 1.3e-06 58.2 55 47.3
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 2.3e-06 57.4 99 32.3
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 2.3e-06 57.4 100 34.0
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.9e-06 57.0 92 34.8
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.9e-06 57.0 201 29.9
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.9e-06 56.6 42 54.8
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.9e-06 56.6 45 51.1
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.9e-06 56.6 52 44.2
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.0e-06 56.2 59 44.1
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.0e-06 56.2 45 51.1
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 6.6e-06 55.8 100 34.0


User provided reference genes

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