Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 3.3e-209 731.5 372 100.0
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 1.1e-201 706.4 360 100.0
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 2.1e-200 702.2 360 99.4
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 2.0e-198 695.7 360 98.3
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 1.1e-191 673.3 360 95.8
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 2.4e-191 672.2 359 94.4
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 1.7e-189 666.0 360 93.9
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 2.9e-189 665.2 360 93.6
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 2.8e-168 595.5 364 83.8
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 5.8e-166 587.8 365 81.9
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 1.7e-165 586.3 366 82.2
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 2.3e-162 575.9 370 80.3
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 6.7e-162 574.3 371 80.1
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 1.1e-161 573.5 363 80.2
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 1.6e-160 569.7 370 79.2
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 1.1e-159 567.0 370 78.9
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 1.4e-159 566.6 372 79.3
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 1.4e-159 566.6 371 78.2
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 1.8e-159 566.2 370 78.6
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 4.1e-159 565.1 361 81.2
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 4.1e-159 565.1 368 79.3
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 5.3e-159 564.7 370 78.9
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 1.2e-158 563.5 372 79.0
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 2.6e-158 562.4 370 78.1
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 2.6e-158 562.4 371 77.9
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 4.5e-158 561.6 370 78.1
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 4.5e-158 561.6 375 79.2
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 1.0e-157 560.5 368 78.8
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 1.7e-157 559.7 372 78.0
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 3.8e-157 558.5 374 78.6
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 5.0e-157 558.1 374 78.3
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 6.5e-157 557.8 362 78.7
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 6.5e-157 557.8 371 77.9
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 1.1e-156 557.0 373 76.7
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 1.9e-156 556.2 369 78.9
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 3.2e-156 555.4 362 78.2
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 4.2e-156 555.1 371 77.6
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 5.5e-156 554.7 371 78.2
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 5.5e-156 554.7 365 78.9
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 5.5e-156 554.7 365 78.9
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 7.2e-156 554.3 365 78.6
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 1.6e-155 553.1 371 77.4
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 1.6e-155 553.1 370 78.1
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 1.6e-155 553.1 368 77.7
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 3.6e-155 552.0 368 78.0
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 6.1e-155 551.2 358 76.8
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.3e-154 550.1 363 78.2
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 2.3e-154 549.3 367 76.6
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 3.0e-154 548.9 370 76.5
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 3.9e-154 548.5 360 77.2
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 3.9e-154 548.5 363 78.2
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 5.1e-154 548.1 363 78.0
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 1.1e-153 547.0 365 76.7
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 1.5e-153 546.6 359 78.3
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 1.5e-153 546.6 370 76.2
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.5e-153 546.6 361 78.4
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 1.5e-153 546.6 366 77.0
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 3.3e-153 545.4 369 75.3
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 3.3e-153 545.4 364 78.0
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 3.3e-153 545.4 375 76.3
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 5.7e-153 544.7 358 76.8
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 7.4e-153 544.3 367 76.8
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 7.4e-153 544.3 359 78.3
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 9.7e-153 543.9 366 77.3
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 1.3e-152 543.5 378 75.9
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 1.6e-152 543.1 358 77.7
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 2.2e-152 542.7 368 75.8
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 2.8e-152 542.3 367 77.1
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 3.7e-152 542.0 371 76.0
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 3.7e-152 542.0 363 76.9
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 3.7e-152 542.0 363 76.3
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 1.1e-151 540.4 408 70.3
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 1.8e-151 539.7 367 76.6
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 1.8e-151 539.7 368 75.8
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.4e-151 539.3 371 74.9
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 2.4e-151 539.3 367 76.3
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 3.1e-151 538.9 367 76.3
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 5.3e-151 538.1 370 75.9
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 6.9e-151 537.7 365 74.5
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.4e-150 535.4 391 72.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 5.9e-150 534.6 370 74.6
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 3.8e-149 531.9 369 75.3
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 6.5e-149 531.2 365 75.1
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.4e-148 530.0 365 74.5
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 3.2e-148 528.9 361 75.6
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.2e-148 528.9 362 75.1
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 7.2e-148 527.7 361 75.1
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 2.1e-147 526.2 359 74.7
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 3.6e-147 525.4 372 74.5
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 6.1e-147 524.6 359 74.7
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 6.1e-147 524.6 359 74.1
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 6.1e-147 524.6 359 74.7
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 1.0e-146 523.9 359 74.7
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 1.0e-146 523.9 359 74.7
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 1.0e-146 523.9 359 74.7
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 1.4e-146 523.5 359 74.1
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 1.8e-146 523.1 362 74.3
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 5.1e-146 521.5 364 74.2
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 6.7e-146 521.2 365 74.5
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 2.6e-145 519.2 360 72.8
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 2.6e-145 519.2 364 73.9
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 2.2e-144 516.2 365 74.0
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 2.2e-144 516.2 360 73.9
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 6.3e-144 514.6 361 73.4
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 8.2e-144 514.2 364 74.2
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 5.9e-142 508.1 358 74.3
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.8e-141 505.4 391 69.8
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 6.5e-141 504.6 360 71.1
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 1.9e-140 503.1 349 76.2
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 5.5e-140 501.5 348 74.4
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 2.7e-139 499.2 345 75.7
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 4.7e-139 498.4 335 76.4
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 1.8e-138 496.5 337 76.6
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 5.2e-138 495.0 381 68.0
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 4.4e-137 491.9 360 70.0
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 4.5e-134 481.9 278 84.9
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 3.0e-130 469.2 367 67.6
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.5e-126 455.7 359 66.9
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 6.3e-120 434.9 382 62.6
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 7.0e-119 431.4 401 60.3
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 3.5e-118 429.1 357 65.0
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.7e-117 426.8 384 62.5
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 1.0e-109 401.0 290 74.8
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 2.0e-102 376.7 325 62.8
CARHR190170 Cardamine hirsuta HOM05D003223 ORTHO05D004865 2.8e-99 366.3 239 73.2
TAR633G2269 Trochodendron aralioides HOM05D003223 ORTHO05D004865 9.5e-92 341.3 185 89.2
FAN02G4497 Fragaria x ananassa HOM05D001060 ORTHO05D000905 3.0e-85 319.7 232 75.4
Actinidia19950 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.5e-84 317.4 290 61.0
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 3.2e-71 273.1 205 74.6
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 3.2e-71 273.1 205 74.6
Duzib106G1784 Durio zibethinus HOM05D003223 ORTHO05D004865 5.4e-71 272.3 179 79.9
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 3.0e-69 266.5 349 45.8
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 5.8e-65 252.3 201 66.7
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 2.4e-55 220.3 187 68.4
PRCOL_00004888 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 1.0e-53 214.9 258 43.4
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 1.6e-51 207.6 346 39.0
MCO03G244 Micromonas commoda HOM05D003223 ORTHO05D004865 3.1e-50 203.4 344 39.5
CDE04G2131 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 5.3e-50 202.6 126 83.3
Actinidia20597 Actinidia chinensis HOM05D003223 ORTHO05D004865 1.7e-48 197.6 172 67.4
C09p07580 Brassica napus HOM05D002664 ORTHO05D002974 1.0e-45 188.3 113 75.2
CAN.G1211.4 Capsicum annuum HOM05D003223 ORTHO05D004865 8.2e-43 178.7 135 75.6
VMungo1309G2105 Vigna mungo HOM05D003223 ORTHO05D004865 2.2e-40 170.6 157 66.2
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 2.1e-38 164.1 151 68.2
MCO16G616 Micromonas commoda HOM05D003223 ORTHO05D004865 1.7e-35 154.5 332 36.1
BcaNung05205 Brassica carinata HOM05D003223 ORTHO05D039635 1.8e-34 151.0 112 64.3
PRCOL_00006825 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 4.1e-34 149.8 421 29.5
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 1.0e-29 135.2 151 55.6
Nitab4.5_0001903g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.4e-21 108.2 75 69.3
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 9.1e-18 95.5 130 50.0
Nitab4.5_0008354g0050 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-17 94.7 98 51.0
DCAR_010872 Daucus carota HOM05D003223 ORTHO05D004865 5.9e-17 92.8 53 81.1
Cfa024590 Carpinus fangiana HOM05D003223 ORTHO05D014810 6.1e-14 82.8 200 28.5
BcaNung05206 Brassica carinata HOM05D003223 ORTHO05D039635 2.8e-11 73.9 86 47.7
Psat0s7774g0080 Pisum sativum HOM05D003223 ORTHO05D037353 5.9e-09 66.2 101 47.5
Psat7g005320 Pisum sativum HOM05D003223 ORTHO05D037353 5.9e-09 66.2 93 49.5
TAR633G0290 Trochodendron aralioides HOM05D003223 ORTHO05D004865 7.7e-09 65.9 95 47.4
Cre02.g093700 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D014810 1.9e-07 61.2 209 24.9
Sabra19G0000900 Salix brachista HOM05D003223 ORTHO05D349924 5.5e-07 59.7 85 47.1
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 2.7e-06 57.4 87 42.5


User provided reference genes

Program Settings