Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.2e-127 459.9 244 100.0
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.1e-125 453.4 241 99.2
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 7.3e-117 424.1 228 98.2
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.8e-116 422.2 236 92.4
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 4.7e-116 421.4 236 92.4
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 6.4e-113 411.0 244 89.3
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.8e-108 395.6 235 87.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 5.3e-91 338.2 245 73.5
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 4.5e-90 335.1 244 72.1
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.1e-85 320.5 251 70.1
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.8e-84 315.8 246 69.1
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 2.8e-84 315.8 247 69.2
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 6.3e-84 314.7 246 68.7
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 8.2e-84 314.3 249 70.3
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 5.9e-82 308.1 248 69.4
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 5.5e-80 301.6 246 65.4
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 9.4e-80 300.8 231 68.4
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.0e-78 297.4 249 66.7
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.3e-76 290.4 254 65.0
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 2.2e-76 289.7 249 66.3
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 2.2e-76 289.7 255 64.7
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 1.1e-75 287.3 243 66.3
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.4e-75 286.2 256 64.1
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 9.1e-75 284.3 246 65.4
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 9.1e-75 284.3 245 64.5
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 2.6e-74 282.7 242 64.5
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 5.0e-73 278.5 246 63.4
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 6.5e-73 278.1 248 62.5
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.4e-72 276.9 247 64.8
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.9e-72 276.6 252 62.7
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 3.2e-72 275.8 248 63.3
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 4.2e-72 275.4 250 63.6
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.4e-72 274.2 251 62.5
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.2e-71 273.9 251 62.5
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 1.2e-71 273.9 250 64.8
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.6e-71 272.3 240 64.6
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.1e-71 271.6 251 61.8
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 7.9e-71 271.2 243 63.4
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.0e-70 270.8 252 63.5
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.0e-70 270.8 246 62.6
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.4e-70 270.4 236 63.1
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.3e-70 269.6 245 63.3
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 3.0e-70 269.2 245 63.3
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.0e-70 269.2 245 64.5
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.9e-70 268.9 245 64.5
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.9e-70 268.9 251 61.4
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 5.1e-70 268.5 242 61.6
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 5.1e-70 268.5 246 63.4
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 5.1e-70 268.5 246 61.0
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 4.4e-69 265.4 248 60.9
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 5.7e-69 265.0 250 60.8
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.7e-68 263.5 247 61.5
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 2.2e-68 263.1 255 60.0
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 2.2e-68 263.1 246 61.0
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 2.8e-68 262.7 243 62.1
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 3.7e-68 262.3 228 63.2
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 6.3e-68 261.5 242 61.2
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 8.2e-68 261.2 247 60.3
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.4e-67 260.4 251 59.8
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.4e-67 259.6 254 57.9
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 3.1e-67 259.2 244 59.4
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 5.3e-67 258.5 247 60.3
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 7.0e-67 258.1 248 61.3
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.2e-66 257.3 247 60.7
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.2e-66 257.3 252 61.5
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.2e-66 257.3 247 60.7
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 1.5e-66 256.9 245 60.4
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.0e-66 256.5 250 60.0
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.0e-66 256.5 255 56.9
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 3.4e-66 255.8 249 60.2
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.9e-65 252.7 255 56.1
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 8.5e-65 251.1 250 60.4
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 6.1e-63 245.0 241 59.3
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.1e-63 245.0 260 55.8
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.0e-62 244.2 236 58.9
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.4e-62 243.8 246 57.7
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.8e-62 243.4 257 55.3
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 2.3e-62 243.0 252 57.1
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.0e-62 242.7 257 55.3
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 3.9e-62 242.3 247 55.5
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 3.9e-62 242.3 240 58.8
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 5.2e-62 241.9 256 55.9
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 6.7e-62 241.5 254 55.9
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.5e-61 240.4 257 55.3
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.5e-61 240.4 251 56.2
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.5e-61 240.4 251 56.2
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.5e-61 240.4 250 56.8
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.5e-61 240.4 255 55.7
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.0e-61 240.0 244 59.0
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.7e-60 236.9 245 56.3
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 2.2e-60 236.5 257 54.9
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.8e-60 236.1 255 54.1
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.1e-59 234.2 222 62.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 1.8e-59 233.4 237 58.6
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 4.1e-59 232.3 250 55.6
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.6e-58 230.3 235 56.6
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.6e-58 230.3 235 56.6
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.9e-57 226.1 254 55.1
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.5e-56 223.8 244 56.6
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 3.2e-56 222.6 177 66.7
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 5.5e-56 221.9 258 52.3
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 7.2e-56 221.5 245 53.9
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 4.7e-55 218.8 190 63.2
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 8.0e-55 218.0 250 52.0
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.8e-54 214.5 176 64.2
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.5e-53 213.8 234 52.6
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 2.0e-50 203.4 252 50.8
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.0e-49 201.1 252 50.4
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 3.8e-49 199.1 255 49.0
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 5.0e-49 198.7 251 49.4
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.9e-48 196.8 251 49.0
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.9e-48 196.8 251 49.0
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.0e-45 186.8 197 57.4
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.7e-44 183.7 119 81.5
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 7.0e-35 151.8 144 59.0
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.6e-34 150.6 244 42.6
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 4.5e-34 149.1 119 65.5
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 7.3e-32 141.7 119 65.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.5e-24 116.7 75 80.0
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 3.6e-23 112.8 200 36.0
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.5e-21 107.5 252 34.9
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 7.5e-21 105.1 79 75.9
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 3.7e-20 102.8 133 48.9
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.2e-15 87.8 87 52.9
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 4.0e-14 82.8 98 51.0
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 6.8e-14 82.0 149 36.2
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 9.9e-13 78.2 63 66.7
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 8.3e-12 75.1 122 45.9
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.0e-09 68.2 85 42.4
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 8.6e-09 65.1 54 57.4
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 2.5e-08 63.5 70 51.4


User provided reference genes

Program Settings