Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 0.0e+00 1324.7 700 100.0
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 0.0e+00 1264.6 698 95.3
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 0.0e+00 1194.9 638 99.2
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 0.0e+00 1172.1 701 89.0
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 0.0e+00 1094.3 701 83.6
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 4.7e-310 1067.4 701 81.5
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 6.4e-307 1057.0 701 81.2
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 2.3e-179 633.3 702 51.0
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 7.6e-175 618.2 703 50.5
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 1.7e-166 590.5 694 51.9
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 4.2e-165 585.9 689 49.5
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 1.6e-164 583.9 687 52.7
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 5.8e-159 565.5 701 47.8
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 7.1e-157 558.5 695 48.5
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 3.8e-150 536.2 695 48.1
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 5.3e-144 515.8 703 45.7
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 2.0e-143 513.8 707 46.1
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 8.5e-142 508.4 704 45.6
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 3.0e-139 500.0 711 45.7
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 2.0e-138 497.3 705 45.4
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 1.3e-134 484.6 697 44.2
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 2.1e-132 477.2 688 45.3
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 8.8e-131 471.9 705 43.8
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 2.2e-129 467.2 704 43.9
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 2.4e-128 463.8 705 44.0
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 2.4e-128 463.8 705 43.7
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 5.3e-128 462.6 705 43.5
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 9.1e-128 461.8 704 43.5
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 7.5e-122 442.2 698 42.8
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 2.8e-121 440.3 700 42.1
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 1.8e-120 437.6 705 41.3
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 2.7e-119 433.7 704 41.8
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 8.8e-115 418.7 689 41.9
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 1.7e-113 414.5 700 40.1
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 1.4e-112 411.4 682 40.6
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 3.5e-111 406.8 691 39.7
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 2.2e-110 404.1 705 39.9
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 1.9e-109 401.0 468 51.3
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 2.1e-108 397.5 750 37.1
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 4.4e-106 389.8 687 39.4
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 4.1e-104 383.3 746 37.5
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 1.2e-103 381.7 702 39.2
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 2.7e-103 380.6 705 38.7
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 2.3e-102 377.5 713 38.0
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 1.2e-100 371.7 702 39.0
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 2.0e-98 364.4 687 37.1
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.6e-98 364.0 683 38.7
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 2.9e-97 360.5 701 36.9
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 8.3e-97 359.0 696 36.9
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 1.4e-96 358.2 700 38.3
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 1.6e-95 354.8 693 39.2
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 3.5e-95 353.6 688 37.8
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 4.6e-95 353.2 682 37.8
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 4.6e-95 353.2 696 37.4
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 5.9e-95 352.8 640 40.6
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 3.0e-94 350.5 311 58.8
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 1.1e-93 348.6 692 37.6
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 7.3e-93 345.9 698 36.7
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.6e-92 344.7 681 38.5
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 1.1e-91 342.0 690 39.4
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 1.1e-91 342.0 696 37.9
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 3.1e-91 340.5 634 39.9
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 3.4e-90 337.0 552 41.3
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 6.4e-89 332.8 683 36.9
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 7.0e-88 329.3 648 36.7
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 9.2e-88 328.9 721 35.6
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 2.7e-87 327.4 699 36.5
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.6e-87 326.6 680 36.6
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.3e-86 324.3 477 47.0
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 8.6e-86 322.4 515 42.7
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 4.3e-85 320.1 365 52.3
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 1.2e-84 318.5 692 37.0
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 5.8e-82 309.7 539 40.3
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 3.2e-80 303.9 693 36.4
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 3.0e-78 297.4 694 35.3
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.0e-78 297.4 650 35.2
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 1.1e-77 295.4 702 34.9
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 1.5e-77 295.0 701 32.7
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 1.6e-76 291.6 683 34.4
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 7.1e-72 276.2 373 46.4
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 2.3e-70 271.2 695 32.8
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.0e-70 270.8 416 41.8
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 8.6e-70 269.2 695 34.2
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 1.1e-69 268.9 695 34.2
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.1e-69 268.9 695 32.8
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 3.3e-69 267.3 717 32.2
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 6.2e-68 263.1 693 33.9
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 6.2e-68 263.1 693 33.9
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 6.2e-68 263.1 693 33.9
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 4.9e-65 253.4 322 46.6
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 7.1e-64 249.6 454 41.0
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 3.5e-63 247.3 423 40.9
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 4.6e-63 246.9 426 42.5
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 1.7e-62 245.0 314 46.8
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 3.0e-62 244.2 254 52.4
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 9.6e-61 239.2 522 35.8
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.3e-60 238.8 230 57.4
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 1.4e-59 235.3 471 37.2
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 9.0e-59 232.6 448 37.9
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 1.5e-58 231.9 711 30.8
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 1.3e-57 228.8 422 38.4
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 3.0e-54 217.6 516 37.8
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 6.7e-54 216.5 246 50.8
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 1.9e-53 214.9 719 29.5
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 7.6e-50 203.0 412 38.3
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 9.9e-50 202.6 745 30.9
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 3.8e-49 200.7 481 37.0
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 9.3e-48 196.1 306 41.8
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 1.0e-46 192.6 395 37.7
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 8.2e-44 183.0 200 52.5
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 2.0e-42 178.3 128 70.3
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 2.3e-38 164.9 213 49.3
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 8.7e-38 162.9 133 63.2
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 4.2e-32 144.1 353 32.6
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 1.8e-30 138.7 762 26.9
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.1e-29 136.0 316 36.7
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 3.1e-27 127.9 178 44.9
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 5.1e-22 110.5 104 54.8
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 8.8e-22 109.8 339 31.9
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 5.3e-19 100.5 92 54.3
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 2.6e-18 98.2 336 30.1
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 1.0e-17 96.3 241 34.0
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 8.5e-17 93.2 208 33.7
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 2.7e-15 88.2 267 30.3
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 1.3e-09 69.3 106 43.4
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 1.7e-09 68.9 79 41.8
CBR_g41780 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-06 58.9 51 56.9


User provided reference genes

Program Settings