Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 3.0e-238 828.2 436 100.0
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.7e-233 812.4 436 97.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 6.1e-231 803.9 436 97.2
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.9e-217 758.4 437 91.3
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.6e-181 639.0 427 80.8
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 6.6e-161 571.2 445 69.9
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.3e-160 568.9 438 73.7
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.1e-159 566.2 459 69.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.9e-155 553.1 441 67.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.9e-152 543.1 439 67.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.9e-152 543.1 494 62.6
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.5e-152 542.7 440 66.6
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 9.6e-152 540.8 438 67.1
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 4.0e-150 535.4 446 66.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 5.3e-150 535.0 440 66.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 7.6e-149 531.2 438 66.0
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.9e-148 529.3 438 66.4
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.9e-148 528.5 438 66.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-148 528.5 438 66.4
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.9e-148 528.5 441 65.8
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 6.4e-148 528.1 446 65.0
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.4e-148 527.7 437 66.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.1e-147 527.3 453 65.1
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.9e-147 526.6 437 65.7
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.9e-147 526.6 428 67.3
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-146 523.1 438 66.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 2.7e-146 522.7 471 61.8
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.5e-146 522.3 442 65.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-145 520.4 438 65.8
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.3e-145 520.4 441 63.7
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.3e-145 520.4 441 65.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.8e-145 520.0 438 65.5
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 5.1e-145 518.5 446 66.1
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 6.7e-145 518.1 443 65.5
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.1e-144 517.3 446 65.9
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.5e-144 516.9 443 67.0
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.3e-143 513.8 437 65.9
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.7e-143 512.3 442 64.0
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 6.2e-143 511.5 443 63.4
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 8.1e-143 511.1 447 62.9
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.4e-142 509.6 444 64.0
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 6.9e-142 508.1 436 64.9
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.2e-141 507.3 453 63.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.0e-141 506.5 440 63.9
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.0e-141 506.5 440 63.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 5.8e-141 505.0 447 62.4
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.7e-140 503.4 457 61.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 6.4e-140 501.5 443 63.7
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.1e-139 500.7 443 64.3
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.1e-139 500.7 444 61.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 1.1e-139 500.7 446 62.1
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-139 500.4 446 64.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.9e-139 500.0 448 62.7
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.3e-139 497.7 438 63.9
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 9.3e-139 497.7 440 63.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.2e-138 497.3 439 63.1
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.6e-138 496.9 443 63.2
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.6e-138 496.9 440 64.5
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 4.6e-138 495.4 453 61.1
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 7.9e-138 494.6 450 63.6
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.3e-137 493.8 437 62.9
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.3e-135 487.3 457 60.0
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.3e-135 487.3 449 61.7
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.3e-135 487.3 450 60.9
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.3e-135 487.3 441 60.1
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.1e-135 486.5 488 58.6
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.8e-135 486.1 451 63.0
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.8e-135 486.1 457 60.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.7e-135 485.7 439 62.4
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 3.1e-134 482.6 443 59.8
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.1e-134 482.6 448 61.4
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.1e-134 482.6 450 59.8
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 9.0e-134 481.1 440 62.3
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 5.8e-133 478.4 444 60.8
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.8e-132 475.7 453 59.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.9e-132 475.3 288 85.1
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 8.4e-132 474.6 436 60.6
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.5e-131 471.9 446 60.1
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 5.5e-131 471.9 450 60.0
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 3.5e-130 469.2 460 60.0
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 6.1e-130 468.4 473 57.5
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 6.7e-129 464.9 496 55.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 7.4e-128 461.5 448 59.6
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 9.7e-128 461.1 438 60.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.7e-127 459.1 432 59.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 6.3e-127 458.4 458 59.2
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 6.3e-127 458.4 451 60.3
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 6.3e-127 458.4 446 58.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.4e-126 457.2 464 57.3
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.8e-126 456.8 450 59.6
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.1e-126 456.1 436 59.6
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 5.3e-126 455.3 451 60.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 3.8e-124 449.1 449 59.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.4e-123 447.2 441 58.3
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.4e-123 447.2 431 60.8
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.7e-122 443.0 449 56.6
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.0e-121 441.0 438 59.1
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.4e-121 440.7 430 58.4
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.1e-121 438.7 438 58.0
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 3.3e-120 436.0 438 58.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.5e-117 427.2 447 56.8
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 2.0e-117 426.8 448 56.5
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.0e-116 424.5 445 56.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.0e-113 414.5 449 53.5
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.7e-112 408.7 428 54.4
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.4e-110 404.1 443 57.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 2.0e-109 400.2 450 55.3
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 2.6e-109 399.8 375 61.6
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 7.7e-109 398.3 439 54.4
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.0e-108 397.9 439 53.8
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 3.0e-105 386.3 380 58.4
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 4.4e-104 382.5 482 47.5
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 7.4e-104 381.7 440 52.5
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.5e-100 368.2 386 53.9
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 3.6e-98 362.8 436 50.5
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.7e-95 354.0 312 61.9
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.7e-93 346.7 427 50.6
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.8e-89 332.0 433 49.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.4e-86 324.3 483 46.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.4e-86 323.6 517 44.7
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.7e-85 320.1 373 52.8
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 2.9e-84 316.6 308 61.7
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 6.4e-71 272.3 314 53.2
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.9e-68 263.1 169 76.3
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.5e-67 261.2 438 44.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.6e-66 257.7 438 44.7
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 4.6e-61 239.6 217 63.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.8e-56 222.6 137 78.1
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 4.9e-55 219.5 267 47.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 4.9e-55 219.5 267 47.2
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.4e-54 216.1 352 44.0
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.8e-49 199.1 339 42.8
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.3e-43 179.9 187 52.9
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.2e-38 163.7 318 42.5
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 8.1e-34 149.1 148 55.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.2e-32 145.2 91 74.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.9e-32 142.1 83 80.7
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 6.4e-31 139.4 173 47.4
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 6.4e-31 139.4 173 47.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.9e-30 137.9 183 48.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 2.4e-30 137.5 484 28.5
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 4.2e-30 136.7 74 85.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 5.5e-30 136.3 69 92.8
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 7.4e-27 125.9 122 54.9
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.4e-27 125.9 267 41.6
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.8e-26 124.0 95 65.3
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.2e-24 118.6 68 79.4
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.8e-18 96.7 125 48.8
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.2e-16 92.0 450 26.2
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 5.0e-15 86.7 94 58.5
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.5e-11 74.3 62 59.7
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 3.2e-06 57.4 128 36.7
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 5.5e-06 56.6 72 54.2


User provided reference genes

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