Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 8.9e-142 506.9 252 100.0
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 7.5e-125 450.7 233 97.0
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 9.9e-117 423.7 232 90.5
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.4e-94 350.1 244 73.4
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.2e-69 267.3 242 58.7
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-67 260.8 242 59.9
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 7.0e-62 241.5 244 55.3
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.2e-59 231.5 165 67.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.6e-58 230.3 242 52.5
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 3.7e-55 219.2 165 65.5
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 4.8e-55 218.8 232 53.4
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 6.3e-55 218.4 227 50.2
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 8.2e-55 218.0 157 66.2
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.1e-54 217.6 194 55.2
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.1e-54 215.7 203 56.2
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 5.3e-54 215.3 154 66.9
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 7.0e-54 214.9 178 59.6
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 7.7e-53 211.5 245 50.2
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.0e-52 211.1 160 63.8
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.3e-52 210.7 241 50.2
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 5.0e-52 208.8 157 65.0
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 8.5e-52 208.0 272 46.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.1e-51 207.6 183 59.0
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.9e-51 206.8 157 64.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 4.2e-51 205.7 156 62.8
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 4.2e-51 205.7 157 64.3
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 5.5e-51 205.3 157 63.7
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 7.2e-51 204.9 157 63.7
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-50 203.8 248 48.4
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 2.1e-50 203.4 172 61.0
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-50 203.0 245 49.8
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-50 203.0 157 63.1
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.7e-50 202.2 172 59.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.1e-50 201.8 157 64.3
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.0e-49 201.1 173 60.7
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.0e-49 199.5 157 62.4
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.0e-49 199.5 157 61.8
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 4.0e-49 199.1 176 59.7
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 8.8e-49 198.0 202 51.5
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 1.5e-48 197.2 175 57.1
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.7e-47 193.7 258 48.4
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-47 193.7 149 61.1
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 6.3e-47 191.8 266 46.6
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.8e-46 190.3 174 55.7
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 3.1e-46 189.5 184 52.2
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.1e-46 189.1 155 61.3
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 5.3e-46 188.7 171 57.3
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.2e-45 187.6 154 63.0
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.6e-45 187.2 189 52.4
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.6e-45 187.2 159 61.6
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 2.7e-45 186.4 155 59.4
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.5e-45 186.0 183 54.1
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 5.9e-45 185.3 270 43.3
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 5.9e-45 185.3 254 44.9
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 7.7e-45 184.9 156 60.3
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.3e-44 184.1 193 52.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.3e-44 184.1 155 58.7
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.2e-44 183.3 175 56.0
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.2e-44 183.3 243 44.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 2.2e-44 183.3 212 47.6
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.8e-44 182.6 274 40.9
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 3.8e-44 182.6 176 53.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.0e-44 182.2 204 49.0
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 8.5e-44 181.4 272 41.5
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.1e-43 181.0 174 54.6
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.1e-43 181.0 184 52.7
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.5e-43 179.9 233 46.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.2e-43 179.5 156 57.7
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.2e-43 179.1 236 44.1
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 4.2e-43 179.1 179 55.3
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 5.5e-43 178.7 179 55.9
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 7.2e-43 178.3 161 55.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 2.7e-42 176.4 157 58.0
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 2.7e-42 176.4 216 45.4
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.6e-42 176.0 182 51.6
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.0e-42 174.9 180 53.9
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.0e-42 174.9 180 53.9
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.0e-41 174.5 179 54.7
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.0e-41 174.5 179 54.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.4e-41 174.1 179 52.5
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.4e-41 174.1 204 47.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.4e-41 174.1 191 50.8
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.8e-41 173.7 206 47.1
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.3e-41 173.3 214 45.3
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.3e-41 173.3 157 56.1
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.0e-41 172.9 182 50.5
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.2e-41 172.2 159 56.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 6.8e-41 171.8 217 44.7
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 8.8e-41 171.4 181 50.8
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 8.8e-41 171.4 162 55.6
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 8.8e-41 171.4 181 50.3
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 4.4e-40 169.1 181 50.3
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 4.4e-40 169.1 144 59.0
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 5.7e-40 168.7 159 55.3
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 5.7e-40 168.7 159 55.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 7.5e-40 168.3 135 60.7
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.3e-39 167.5 140 60.7
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 2.2e-39 166.8 152 54.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.1e-38 162.9 268 39.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 4.1e-38 162.5 273 39.6
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 4.1e-38 162.5 180 48.9
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.6e-37 160.6 100 74.0
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.0e-37 160.2 251 42.2
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 7.7e-37 158.3 159 54.7
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 7.7e-37 158.3 159 54.1
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 3.8e-36 156.0 241 40.2
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 8.6e-36 154.8 158 53.2
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.9e-35 153.7 158 53.8
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.1e-34 150.2 179 48.0
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.0e-33 147.9 157 49.0
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.4e-33 147.5 114 61.4
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 3.0e-33 146.4 239 40.2
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 5.2e-33 145.6 186 46.2
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.0e-32 143.7 247 38.1
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.6e-32 143.3 215 38.6
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.4e-32 142.9 181 46.4
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 4.4e-32 142.5 185 43.2
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 7.0e-30 135.2 149 49.0
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 9.2e-30 134.8 190 42.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.9e-28 129.4 111 56.8
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 1.2e-26 124.4 97 62.9
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 8.9e-25 118.2 68 76.5
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 5.8e-24 115.5 156 44.2
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 9.8e-24 114.8 158 42.4
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 9.8e-24 114.8 158 42.4
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.7e-23 112.8 150 42.7
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.1e-22 111.3 243 34.6
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.7e-20 104.0 169 39.1
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.6e-20 102.1 62 67.7
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.5e-19 100.9 95 54.7
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-17 93.6 67 59.7
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.0e-17 92.8 74 63.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 5.2e-17 92.4 168 33.9
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 7.5e-16 88.6 91 52.7
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.4e-14 84.3 152 38.8
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.2e-13 81.3 149 34.9
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-12 78.2 48 62.5
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.7e-12 77.4 182 34.1
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.1e-11 74.7 50 62.0
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-11 74.3 53 66.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.3e-11 73.2 53 64.2
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 1.6e-10 70.9 128 33.6
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.8e-09 67.4 147 35.4
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.0e-08 63.9 81 46.9
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.9e-07 59.3 49 57.1
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.4e-06 57.0 114 30.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 9.2e-06 55.1 72 45.8


User provided reference genes

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