Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 5.1e-87 324.3 158 100.0
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.4e-76 288.9 160 90.0
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.4e-65 253.1 160 79.4
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 8.8e-55 217.2 150 71.3
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-52 210.3 141 72.3
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 9.1e-52 207.2 162 64.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 5.9e-51 204.5 145 69.0
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.0e-50 203.8 144 68.1
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.7e-50 203.0 142 69.7
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.2e-50 202.6 141 70.9
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 7.2e-49 197.6 140 65.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 7.2e-49 197.6 140 65.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 9.4e-49 197.2 141 66.0
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.6e-48 196.4 134 69.4
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.0e-47 191.8 153 64.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.3e-45 186.8 158 57.6
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 3.7e-45 185.3 144 63.2
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 4.8e-45 184.9 129 65.9
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.3e-45 184.5 138 65.2
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.1e-44 183.7 124 68.5
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-44 183.0 141 62.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 2.4e-44 182.6 147 61.2
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 5.4e-44 181.4 141 63.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 9.1e-44 180.6 123 68.3
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 9.1e-44 180.6 123 68.3
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 9.1e-44 180.6 153 58.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.1e-44 180.6 141 61.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.2e-43 180.3 123 69.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.6e-43 179.9 133 63.9
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.6e-43 179.9 125 67.2
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.7e-43 179.1 133 63.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.7e-43 179.1 134 62.7
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 3.5e-43 178.7 147 61.9
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.5e-43 178.7 144 61.8
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.9e-43 177.9 131 64.9
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 5.9e-43 177.9 133 63.9
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.7e-43 177.6 131 64.9
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 7.7e-43 177.6 135 63.0
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.0e-42 177.2 125 66.4
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.0e-42 177.2 139 61.9
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.0e-42 177.2 135 63.0
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.2e-42 176.0 139 60.4
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 2.9e-42 175.6 129 65.1
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 5.0e-42 174.9 146 60.3
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 5.0e-42 174.9 133 64.7
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 5.0e-42 174.9 144 60.4
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 6.5e-42 174.5 146 59.6
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 8.5e-42 174.1 164 54.3
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 8.5e-42 174.1 123 67.5
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 8.5e-42 174.1 139 60.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.5e-42 174.1 139 60.4
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.1e-41 173.7 123 65.9
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.1e-41 173.7 139 61.9
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.1e-41 173.7 144 60.4
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.1e-41 173.7 159 56.0
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.5e-41 173.3 125 66.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.9e-41 172.9 138 61.6
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.9e-41 172.9 123 66.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.5e-41 172.6 126 64.3
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.5e-41 172.6 125 65.6
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.5e-41 172.6 137 62.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.2e-41 172.2 140 60.7
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.2e-41 172.2 131 63.4
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.2e-41 171.8 125 65.6
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 4.2e-41 171.8 123 66.7
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 4.2e-41 171.8 123 67.5
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 5.5e-41 171.4 131 63.4
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 5.5e-41 171.4 161 55.3
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 5.5e-41 171.4 144 59.0
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.6e-40 169.9 140 59.3
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.6e-40 169.9 126 62.7
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.6e-40 169.9 159 57.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.6e-40 169.9 134 62.7
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.7e-40 169.1 138 60.9
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.7e-40 169.1 138 60.9
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-40 169.1 131 62.6
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.6e-40 168.7 143 60.1
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.6e-40 168.7 123 63.4
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.6e-40 168.7 137 60.6
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.7e-40 168.3 141 61.7
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.1e-40 167.9 123 63.4
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 8.0e-40 167.5 142 59.9
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.0e-39 167.2 126 61.1
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.0e-39 167.2 126 61.1
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.4e-39 166.8 144 58.3
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 3.0e-39 165.6 134 61.2
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 5.2e-39 164.9 139 60.4
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 5.2e-39 164.9 126 61.9
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.8e-39 164.5 123 62.6
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 6.8e-39 164.5 142 58.5
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 6.8e-39 164.5 170 52.4
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 8.8e-39 164.1 142 59.9
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.2e-38 163.7 123 60.2
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.2e-38 163.7 147 58.5
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 3.4e-38 162.2 143 58.0
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 3.4e-38 162.2 150 58.7
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.4e-38 162.2 165 50.9
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 9.8e-38 160.6 144 60.4
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.8e-38 160.6 120 62.5
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.7e-37 159.8 126 60.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.9e-37 158.3 224 42.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 4.9e-37 158.3 143 54.5
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 4.9e-37 158.3 133 60.9
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.1e-36 157.1 140 53.6
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.8e-36 156.4 108 67.6
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.4e-36 156.0 139 55.4
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.4e-36 156.0 124 62.1
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 5.4e-36 154.8 128 59.4
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 5.4e-36 154.8 128 59.4
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.6e-35 153.3 128 59.4
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-35 153.3 128 59.4
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.6e-35 153.3 128 59.4
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 6.6e-34 147.9 153 51.6
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 8.6e-34 147.5 106 66.0
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 9.5e-33 144.1 93 69.9
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 1.4e-31 140.2 123 55.3
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.2e-31 138.3 160 48.1
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-29 132.5 101 61.4
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-28 130.2 95 63.2
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.8e-28 129.8 128 50.8
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 3.2e-28 129.0 84 81.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.0e-27 126.3 132 48.5
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.9e-25 119.8 142 42.3
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.3e-25 119.0 139 43.9
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 4.3e-25 118.6 67 71.6
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 9.5e-25 117.5 123 43.9
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.1e-24 116.3 138 42.0
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.2e-22 110.5 128 42.2
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 3.4e-22 109.0 126 43.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 4.9e-21 105.1 81 63.0
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 1.2e-19 100.5 137 38.7
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 3.5e-19 99.0 65 67.7
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.8e-15 86.7 64 70.3
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 3.1e-15 85.9 70 64.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.7e-13 80.1 144 34.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.9e-13 79.3 70 61.4
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.5e-09 67.0 65 58.5
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.1e-07 60.8 133 29.3


User provided reference genes

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