Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g032170 Solanum pennellii HOM05D002762 ORTHO05D008831 0.0e+00 1251.9 626 100.0
Solyc01g080360.3 Solanum lycopersicum HOM05D002762 ORTHO05D008831 0.0e+00 1237.2 626 98.7
CAN.G889.17 Capsicum annuum HOM05D002762 ORTHO05D008831 0.0e+00 1181.4 628 94.3
Nitab4.5_0000894g0020 Nicotiana tabacum HOM05D002762 ORTHO05D008831 0.0e+00 1114.8 603 91.5
Nitab4.5_0000059g0110 Nicotiana tabacum HOM05D002762 ORTHO05D008831 1.4e-308 1062.4 568 93.3
Peaxi162Scf00095g00610 Petunia axillaris HOM05D002762 ORTHO05D008831 2.5e-302 1041.6 583 88.9
CSS0041967 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 1.9e-294 1015.4 630 77.9
Actinidia40215 Actinidia chinensis HOM05D002762 ORTHO05D008831 2.0e-291 1005.4 627 77.4
TAR365G0003 Trochodendron aralioides HOM05D002762 ORTHO05D008831 5.7e-291 1003.8 628 77.5
Rhsim04G0212200 Rhododendron simsii HOM05D002762 ORTHO05D008831 1.4e-284 982.6 628 75.3
GSVIVG01017858001 Vitis vinifera HOM05D002762 ORTHO05D008831 1.2e-283 979.5 629 75.7
CSS0031724 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D008831 7.5e-283 976.9 609 78.0
QL06p006121 Quercus lobata HOM05D002762 ORTHO05D008831 2.4e-281 971.8 625 74.6
Thecc.04G271400 Theobroma cacao HOM05D002762 ORTHO05D008831 1.0e-279 966.5 631 74.5
Cc03_g02810 Coffea canephora HOM05D002762 ORTHO05D008831 4.3e-278 961.1 627 73.8
Ciclev10004552m.g Citrus clementina HOM05D002762 ORTHO05D008831 1.2e-277 959.5 631 73.4
DCAR_030580 Daucus carota HOM05D002762 ORTHO05D008831 4.0e-276 954.5 622 74.3
Haze_01004 Corylus avellana HOM05D002762 ORTHO05D008831 4.4e-275 951.0 675 69.8
Gohir.D09G232800 Gossypium hirsutum HOM05D002762 ORTHO05D008831 4.4e-275 951.0 631 73.1
MBI19_g15847_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D008831 4.4e-275 951.0 629 73.6
Gohir.A09G231700 Gossypium hirsutum HOM05D002762 ORTHO05D008831 7.5e-275 950.3 631 73.1
Gorai.006G255700 Gossypium raimondii HOM05D002762 ORTHO05D008831 7.5e-275 950.3 631 73.1
Duzib052G0147 Durio zibethinus HOM05D002762 ORTHO05D008831 1.7e-274 949.1 631 73.1
TWI53G0007 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 2.9e-274 948.3 627 73.7
Migut.G00243 Erythranthe guttata HOM05D002762 ORTHO05D008831 3.7e-274 948.0 630 72.1
Migut.G00245 Erythranthe guttata HOM05D002762 ORTHO05D008831 3.7e-274 948.0 630 72.1
Duzib212G0752 Durio zibethinus HOM05D002762 ORTHO05D008831 4.9e-274 947.6 631 73.2
MSTRG.3975 Avicennia marina HOM05D002762 ORTHO05D008831 6.4e-274 947.2 627 73.2
Potri.010G028600 Populus trichocarpa HOM05D002762 ORTHO05D008831 7.1e-273 943.7 636 71.9
Lj6A665G69 Lonicera japonica HOM05D002762 ORTHO05D008831 6.6e-271 937.2 663 70.7
vmacro08246 Vaccinium macrocarpon HOM05D002762 ORTHO05D008831 8.6e-271 936.8 655 71.0
MD16G1180200 Malus domestica HOM05D002762 ORTHO05D008831 4.0e-268 927.9 632 70.3
RcHm_v2.0_Chr4g0419641 Rosa chinensis HOM05D002762 ORTHO05D008831 1.5e-267 926.0 634 70.8
ClCG06G005650 Citrullus lanatus HOM05D002762 ORTHO05D008831 2.6e-267 925.2 626 70.4
COL.COLO4_13977 Corchorus olitorius HOM05D002762 ORTHO05D008831 9.9e-267 923.3 631 71.9
CsaV3_6G005500 Cucumis sativus L. HOM05D002762 ORTHO05D008831 2.2e-266 922.2 627 70.7
Sc19g0004720 Simmondsia chinensis HOM05D002762 ORTHO05D008831 2.2e-266 922.2 636 70.8
Aqoxy5G00558 Aquilegia oxysepala HOM05D002762 ORTHO05D008831 4.9e-266 921.0 629 70.4
Oeu035631.1 Olea europaea HOM05D002762 ORTHO05D008831 6.4e-266 920.6 592 76.2
Glyma.17G019900 Glycine max HOM05D002762 ORTHO05D008831 1.4e-265 919.5 625 70.7
Lj4g0021299 Lotus japonicus HOM05D002762 ORTHO05D008831 5.4e-265 917.5 627 70.2
Phvul.003G097700 Phaseolus vulgaris HOM05D002762 ORTHO05D008831 7.1e-265 917.1 628 69.6
CANSAT78G1603 Cannabis sativa HOM05D002762 ORTHO05D008831 7.8e-264 913.7 634 69.6
HanXRQChr07g0192681 Helianthus annuus HOM05D002762 ORTHO05D008831 3.0e-263 911.8 626 71.2
ATR0626G043 Amborella trichopoda HOM05D002762 ORTHO05D008831 8.6e-263 910.2 634 68.8
EL10Ac8g18297 Beta vulgaris HOM05D002762 ORTHO05D008831 1.1e-262 909.8 633 70.8
VMungo1215G1507 Vigna mungo HOM05D002762 ORTHO05D008831 3.3e-262 908.3 625 68.8
FvH4_4g14000 Fragaria vesca HOM05D002762 ORTHO05D008831 5.6e-262 907.5 630 69.7
FAN12G0174 Fragaria x ananassa HOM05D002762 ORTHO05D008831 2.8e-261 905.2 630 69.4
SGA_v2.0_scaffold237G43848 Striga asiatica HOM05D002762 ORTHO05D008831 3.6e-261 904.8 632 69.9
AUR62033230 Chenopodium quinoa HOM05D002762 ORTHO05D008831 6.2e-261 904.0 630 70.2
THA.LOC104802606 Tarenaya hassleriana HOM05D002762 ORTHO05D008831 1.1e-260 903.3 632 70.3
Manes.03G187600 Manihot esculenta HOM05D002762 ORTHO05D008831 1.4e-260 902.9 608 71.5
Lalb_Chr07g0177471 Lupinus albus HOM05D002762 ORTHO05D008831 1.8e-260 902.5 629 68.4
Sabra10G0012300 Salix brachista HOM05D002762 ORTHO05D008831 1.5e-259 899.4 643 68.1
arahy.Tifrunner.gnm1.ann1.08LYWQ Arachis hypogaea HOM05D002762 ORTHO05D008831 7.6e-259 897.1 627 69.2
Nn4g26133 Nelumbo nucifera HOM05D002762 ORTHO05D008831 7.6e-259 897.1 598 72.2
Lsat_1_v5_gn_6_14820 Lactuca sativa HOM05D002762 ORTHO05D008831 1.3e-258 896.3 619 70.0
Psat4g031200 Pisum sativum HOM05D002762 ORTHO05D008831 6.4e-258 894.0 623 67.4
Medtr4g118010 Medicago truncatula HOM05D002762 ORTHO05D008831 1.1e-257 893.3 623 67.1
TPR.G28123 Trifolium pratense HOM05D002762 ORTHO05D008831 1.9e-257 892.5 625 68.2
FAN07G1246 Fragaria x ananassa HOM05D002762 ORTHO05D008831 3.2e-257 891.7 630 68.9
FAN22G0551 Fragaria x ananassa HOM05D002762 ORTHO05D008831 3.2e-257 891.7 630 68.6
Hund09035 Selenicereus undatus HOM05D002762 ORTHO05D008831 5.4e-257 891.0 628 70.2
Ca_21567_v3 Cicer arietinum L. HOM05D002762 ORTHO05D008831 1.6e-256 889.4 623 68.4
AT2G20790 Arabidopsis thaliana HOM05D002762 ORTHO05D008831 1.3e-253 879.8 625 68.5
PSO210G2175 Papaver somniferum HOM05D002762 ORTHO05D008831 1.6e-253 879.4 626 68.2
PSO832G0886 Papaver somniferum HOM05D002762 ORTHO05D008831 4.8e-253 877.9 626 68.5
Eucgr.F00974 Eucalyptus grandis HOM05D002762 ORTHO05D008831 1.4e-252 876.3 591 70.6
AL3G53900 Arabidopsis lyrata HOM05D002762 ORTHO05D008831 1.3e-250 869.8 629 67.1
CARHR111460 Cardamine hirsuta HOM05D002762 ORTHO05D008831 2.2e-250 869.0 626 67.3
arahy.Tifrunner.gnm1.ann1.ZAIR7G Arachis hypogaea HOM05D002762 ORTHO05D008831 1.9e-249 865.9 617 68.4
CiPaw.01G157200 Carya illinoinensis HOM05D002762 ORTHO05D008831 1.6e-248 862.8 573 71.9
Sp6g27240 Schrenkiella parvula HOM05D002762 ORTHO05D008831 3.9e-247 858.2 634 66.2
ECA233G1162 Erigeron canadensis HOM05D002762 ORTHO05D008831 1.1e-246 856.7 625 67.4
Aa31LG8G17700 Aethionema arabicum HOM05D002762 ORTHO05D008831 5.6e-246 854.4 630 66.7
Sed0011257 Sechium edule HOM05D002762 ORTHO05D008831 1.1e-244 850.1 627 66.5
AUR62021313 Chenopodium quinoa HOM05D002762 ORTHO05D008831 4.9e-242 841.3 590 69.7
Thhalv10003762m.g Eutrema salsugineum HOM05D002762 ORTHO05D008831 5.5e-241 837.8 627 64.8
C03p09290 Brassica napus HOM05D002762 ORTHO05D008831 1.8e-239 832.8 628 63.5
BolC3t13425H Brassica oleracea HOM05D002762 ORTHO05D008831 5.1e-239 831.2 628 63.7
A03p08030 Brassica napus HOM05D002762 ORTHO05D008831 9.6e-238 827.0 630 64.8
BraA03t10129Z Brassica rapa HOM05D002762 ORTHO05D008831 9.6e-238 827.0 630 64.8
HPP92_018399 Vanilla planifolia HOM05D002762 ORTHO05D008831 6.5e-234 814.3 632 63.6
Sed0022901 Sechium edule HOM05D002762 ORTHO05D008831 7.9e-232 807.4 627 64.6
CDE11G0719 Ceratophyllum demersum HOM05D002762 ORTHO05D008831 9.6e-230 800.4 626 63.3
Carub.0003s3536 Capsella rubella HOM05D002762 ORTHO05D008831 7.6e-227 790.8 562 66.9
unitig_899.g14405 Utricularia gibba HOM05D002762 ORTHO05D008831 7.9e-224 780.8 600 63.8
Zm00001eb410820 Zea mays HOM05D002762 ORTHO05D008831 5.1e-223 778.1 626 59.9
Prupe.1G147800 Prunus persica HOM05D002762 ORTHO05D008831 2.0e-219 766.1 629 59.8
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 2.3e-199 699.5 440 77.7
MELO3C021387.2 Cucumis melo HOM05D002762 ORTHO05D008831 4.2e-193 678.7 451 71.8
Ah.09g229990 Amaranthus hybridus HOM05D002762 ORTHO05D008831 3.5e-187 659.1 453 71.7
SMO115G0172 Selaginella moellendorffii HOM05D002762 ORTHO05D008831 6.1e-176 621.7 630 50.3
Mapoly0055s0097 Marchantia polymorpha HOM05D002762 ORTHO05D008831 1.4e-175 620.5 641 50.4
SEGI_30175 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.8e-175 620.2 490 63.3
Nn1g08335 Nelumbo nucifera HOM05D002762 ORTHO05D008831 1.2e-174 617.5 416 70.9
Cfa015544 Carpinus fangiana HOM05D002762 ORTHO05D008831 1.0e-162 577.8 398 71.6
AagrBONN_evm.TU.Sc2ySwM_368.1411 Anthoceros agrestis HOM05D002762 ORTHO05D008831 7.8e-155 551.6 601 48.1
Pp3c2_12250 Physcomitrium patens HOM05D002762 ORTHO05D008831 8.9e-151 538.1 629 47.1
Eucgr.B01191 Eucalyptus grandis HOM05D002762 ORTHO05D008831 2.6e-150 536.6 415 63.9
SEGI_25743 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.6e-139 500.7 399 61.7
Cpa.g.sc16.61 Carica papaya HOM05D002762 ORTHO05D008831 5.3e-127 459.1 604 44.7
MD13G1179200 Malus domestica HOM05D002762 ORTHO05D008831 1.2e-123 448.0 421 57.5
CBR_g19730 Chara braunii HOM05D002762 ORTHO05D008831 2.8e-112 410.2 772 35.0
Actinidia23461 Actinidia chinensis HOM05D002762 ORTHO05D008831 3.3e-105 386.7 270 72.2
BcaB01g05249 Brassica carinata HOM05D002762 ORTHO05D008831 3.3e-52 210.7 181 56.9
Os12g0528300 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D008831 1.3e-45 188.7 170 55.9
MD12G1098700 Malus domestica HOM05D002762 ORTHO05D008831 3.0e-45 187.6 163 57.7
MD12G1098800 Malus domestica HOM05D002762 ORTHO05D008831 9.5e-44 182.6 211 46.0
SEGI_28752 Sequoiadendron giganteum HOM05D002762 ORTHO05D008831 1.1e-42 179.1 152 55.9
Actinidia23460 Actinidia chinensis HOM05D002762 ORTHO05D030920 8.9e-34 149.4 82 85.4
VMungo1215G0498 Vigna mungo HOM05D002762 ORTHO05D008831 4.9e-24 117.1 85 67.1
FAN17G1900 Fragaria x ananassa HOM05D002762 ORTHO05D030920 1.5e-17 95.5 81 60.5
COL.COLO4_28661 Corchorus olitorius HOM05D002762 ORTHO05D008831 1.4e-15 89.0 88 54.5
TWI09G1537 Tripterygium wilfordii HOM05D002762 ORTHO05D008831 4.0e-10 70.9 44 72.7
MD13G1179000 Malus domestica HOM05D002762 ORTHO05D030920 1.5e-09 68.9 38 78.9
Glyma.07G254400 Glycine max HOM05D002762 ORTHO05D004643 2.1e-06 58.5 41 70.7


User provided reference genes

Program Settings