Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 2846.6 1382 100.0
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 2264.2 1387 81.3
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1693.7 1382 64.5
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1486.5 1424 55.2
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1484.2 1408 54.1
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1481.5 1408 54.5
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1475.3 1408 54.2
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1467.6 1421 54.3
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1462.6 1409 53.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1458.0 1410 54.2
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1455.7 1467 52.4
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1455.3 1409 53.0
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1449.5 1477 52.9
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1444.5 1477 52.5
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1434.1 1403 52.6
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1433.3 1405 53.2
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1429.1 1498 51.1
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1416.4 1408 53.3
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1410.6 1417 52.9
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1408.7 1411 51.6
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1392.5 1400 52.2
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1390.6 1391 51.5
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1388.2 1391 51.5
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1382.5 1390 51.4
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1380.9 1402 50.6
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1376.3 1464 50.8
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1375.9 1403 51.4
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1373.2 1430 50.8
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1369.8 1387 50.9
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1369.8 1390 52.2
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1368.2 1389 51.0
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1366.3 1406 51.3
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1364.7 1413 51.0
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1356.3 1364 51.4
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1355.9 1415 50.5
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1352.8 1403 50.0
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1350.1 1381 50.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1349.3 1388 50.9
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1345.5 1387 51.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1341.6 1405 49.5
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1340.5 1395 50.7
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1338.9 1380 51.4
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1335.5 1380 49.7
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1334.7 1422 50.1
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1327.4 1423 50.7
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1326.6 1399 50.3
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1323.5 1389 50.8
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1322.4 1370 49.7
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1320.8 1371 49.4
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1315.1 1402 50.6
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1314.3 1374 48.5
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1312.7 1369 48.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1312.7 1368 49.9
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1310.4 1140 57.6
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1310.0 1411 49.4
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1309.3 1368 49.6
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1302.7 1367 49.5
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1301.2 1399 49.2
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1295.0 1368 49.6
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1294.3 1381 48.6
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1293.5 1339 51.2
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1292.7 1385 49.4
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1292.7 1366 49.6
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1288.1 1419 49.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1282.3 1377 50.0
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1281.2 1411 49.8
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1280.4 1368 49.0
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1278.5 1401 47.8
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1264.6 1408 50.2
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1257.7 1388 49.1
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1255.7 1185 55.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1223.0 1364 48.8
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1221.8 1463 45.3
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1201.8 1377 47.9
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1197.2 1387 47.0
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 1366 47.2
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1184.9 1426 46.4
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1183.3 1166 52.3
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1179.1 1415 46.3
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1158.7 1076 55.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1156.0 1075 55.0
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1134.4 1388 44.6
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1116.7 1429 44.9
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1115.5 955 58.0
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1109.0 1080 53.9
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1100.5 951 57.9
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 3.0e-300 1035.8 1028 51.5
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.4e-267 926.0 961 50.2
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.7e-248 863.2 895 52.7
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 6.4e-242 842.0 738 57.9
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.3e-230 803.1 1489 37.0
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.6e-216 757.7 1525 34.0
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 7.9e-216 755.4 775 51.7
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 1.6e-208 731.1 1346 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 2.1e-205 720.7 1498 33.4
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.4e-204 718.0 863 46.8
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 9.3e-201 705.3 597 59.1
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.0e-183 648.7 604 53.5
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 3.3e-174 617.1 583 55.1
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 5.9e-171 606.3 661 50.5
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 6.7e-167 592.8 796 43.1
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.8e-165 587.4 590 52.9
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 8.5e-162 575.9 776 42.7
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.2e-150 538.9 1350 31.3
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.6e-150 537.7 878 39.2
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.1e-127 461.1 587 45.5
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 4.0e-119 434.1 261 80.5
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.4e-111 409.1 393 54.5
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 9.6e-89 333.2 316 53.2
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 9.0e-87 326.6 568 39.3
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 5.5e-84 317.4 360 48.1
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 9.4e-68 263.5 1636 23.1
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.3e-66 258.8 333 42.6
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 3.9e-66 258.1 337 46.0
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-58 233.4 367 37.1
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 4.4e-57 228.0 268 49.6
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.0e-55 220.7 304 41.4
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 1.7e-53 216.1 260 47.3
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 8.5e-53 213.8 204 50.5
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.0e-50 206.8 179 55.3
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 2.8e-48 198.7 1339 22.0
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.8e-48 198.0 244 46.7
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 4.5e-46 191.4 184 52.7
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 8.8e-42 177.2 174 52.9
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-40 172.9 446 28.3
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 2.2e-40 172.6 202 45.0
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 5.5e-36 157.9 97 71.1
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 2.1e-35 156.0 80 87.5
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 2.4e-31 142.5 189 41.8
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.0e-30 139.4 161 45.3
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.9e-28 132.9 153 45.1
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 7.3e-28 131.0 255 34.5
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 4.4e-25 121.7 154 42.2
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 4.1e-23 115.2 109 50.5
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 2.7e-22 112.5 117 47.9
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 4.6e-22 111.7 74 62.2
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.9e-20 106.3 114 45.6
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 7.3e-20 104.4 87 58.6
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 7.5e-17 94.4 84 56.0
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 3.9e-13 82.0 74 55.4
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-11 77.0 61 60.7
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-11 77.0 61 60.7
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.6e-11 76.6 125 37.6
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.8e-10 73.2 61 59.0
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-09 70.5 57 59.6
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-09 68.9 42 57.1
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.4e-09 68.6 55 61.8
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.3e-08 67.0 80 41.2
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.7e-08 66.6 78 52.6
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 3.7e-08 65.5 53 56.6
CBR_g18966 Chara braunii HOM05D014933 ORTHO05D016523 9.2e-07 60.8 192 26.0
BcaC04g20139 Brassica carinata HOM05D005961 ORTHO05D007391 1.2e-06 60.5 119 29.4
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 1.2e-06 60.5 51 52.9
BcaB08g35978 Brassica carinata HOM05D005961 ORTHO05D007391 1.6e-06 60.1 119 29.4
A10p13350 Brassica napus HOM05D005961 ORTHO05D007391 1.6e-06 60.1 119 29.4
C09p47280 Brassica napus HOM05D005961 ORTHO05D007391 1.6e-06 60.1 119 29.4
BolC9t57585H Brassica oleracea HOM05D005961 ORTHO05D007391 1.6e-06 60.1 119 29.4
BraA10t43436Z Brassica rapa HOM05D005961 ORTHO05D007391 1.6e-06 60.1 119 29.4
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.1e-06 59.7 134 31.3
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 2.1e-06 59.7 134 31.3
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 2.1e-06 59.7 63 47.6
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 2.1e-06 59.7 53 52.8
Nn5g27631 Nelumbo nucifera HOM05D001610 ORTHO05D001585 2.1e-06 59.7 142 28.9
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 2.1e-06 59.7 153 30.7
CARHR269490 Cardamine hirsuta HOM05D005961 ORTHO05D007391 4.6e-06 58.5 119 29.4
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.6e-06 58.5 142 29.6
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 6.0e-06 58.2 105 32.4
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 7.8e-06 57.8 73 43.8
Thhalv10014152m.g Eutrema salsugineum HOM05D005961 ORTHO05D007391 7.8e-06 57.8 119 29.4


User provided reference genes

Program Settings