Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 0.0e+00 1173.3 621 100.0
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 0.0e+00 1164.1 621 99.2
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 0.0e+00 1116.7 621 95.5
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.3e-292 1008.4 632 86.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.0e-288 995.3 633 85.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.6e-264 916.0 642 79.4
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.2e-242 842.4 510 86.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.6e-227 792.3 645 68.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 2.4e-217 759.2 639 65.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.3e-215 753.4 644 64.3
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 8.7e-215 750.7 657 64.8
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 3.3e-214 748.8 613 65.7
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 7.4e-214 747.7 639 64.6
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 6.2e-213 744.6 645 64.3
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 6.2e-213 744.6 627 64.6
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 8.4e-210 734.2 599 65.4
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 7.1e-209 731.1 656 62.0
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 1.6e-208 729.9 640 62.7
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.6e-208 729.9 638 62.5
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 2.7e-208 729.2 653 62.8
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.7e-208 729.2 652 63.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.3e-207 726.9 653 62.8
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.3e-207 726.9 554 69.1
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.8e-207 726.5 654 61.2
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 3.0e-207 725.7 637 63.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.9e-207 725.3 653 62.3
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 6.7e-207 724.5 649 62.4
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.1e-206 723.8 647 62.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 5.6e-206 721.5 648 61.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 5.6e-206 721.5 638 63.0
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 7.4e-206 721.1 628 61.9
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.6e-205 719.9 655 61.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.1e-205 719.5 648 61.7
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 3.7e-205 718.8 648 61.7
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 4.8e-205 718.4 638 62.5
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.1e-204 715.7 636 61.6
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.0e-204 715.3 650 60.6
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.0e-203 713.0 638 62.1
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.0e-203 713.0 637 62.3
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.6e-203 712.6 646 61.0
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 5.8e-203 711.4 638 61.6
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 7.6e-203 711.1 643 62.2
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.7e-202 709.9 657 61.8
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.4e-201 706.8 641 61.2
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 5.5e-201 704.9 649 59.8
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 6.0e-200 701.4 576 65.3
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 7.9e-200 701.0 684 58.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 7.9e-200 701.0 639 61.0
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.0e-199 700.7 641 61.6
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.3e-199 700.3 653 59.6
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.3e-199 700.3 630 61.6
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 1.8e-199 699.9 650 60.3
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 8.7e-199 697.6 650 60.6
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.1e-198 697.2 656 60.5
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.5e-198 696.0 641 60.5
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 3.3e-198 695.7 621 61.4
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 2.2e-197 693.0 578 64.0
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.8e-197 692.6 535 67.3
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.8e-196 689.9 647 61.7
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.1e-196 688.7 672 57.9
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.3e-196 688.3 640 59.8
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-195 686.8 672 57.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.0e-194 684.1 674 57.7
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.1e-193 680.6 622 60.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.4e-193 680.2 635 61.1
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 7.2e-193 677.9 641 61.8
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 2.1e-192 676.4 632 60.4
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 7.9e-192 674.5 554 63.4
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.3e-191 672.9 625 58.9
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.5e-190 670.2 628 58.6
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.5e-190 670.2 667 57.7
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 2.0e-190 669.8 646 57.7
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.3e-190 669.1 624 58.2
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 4.3e-190 668.7 639 58.5
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.3e-190 668.7 646 58.0
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 9.7e-190 667.5 630 58.7
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 2.2e-189 666.4 646 57.6
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.6e-187 659.4 642 57.9
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.6e-187 659.4 642 58.9
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.3e-186 657.1 642 58.7
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 5.0e-186 655.2 622 57.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 3.6e-184 649.0 634 56.2
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 7.9e-184 647.9 661 56.0
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.1e-183 645.2 622 58.0
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 3.7e-181 639.0 616 57.6
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.4e-177 627.1 560 60.2
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 2.7e-176 622.9 634 56.9
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.8e-175 620.2 650 54.8
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.9e-175 619.0 600 62.0
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 4.4e-174 615.5 631 55.2
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 7.4e-174 614.8 605 58.5
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.1e-172 609.0 605 56.9
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 8.0e-168 594.7 625 55.2
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.8e-165 586.3 630 55.2
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.1e-164 582.8 603 54.7
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 2.0e-163 580.1 364 86.8
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.7e-160 568.9 584 58.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 5.2e-159 565.5 616 54.7
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.0e-155 553.5 634 53.3
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.7e-154 550.4 657 48.7
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 6.6e-154 548.5 657 50.8
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 5.9e-147 525.4 444 66.7
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.6e-136 489.6 565 48.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-133 480.7 585 49.9
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.0e-130 471.5 645 45.9
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.2e-123 448.0 653 43.2
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.3e-117 427.9 632 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.9e-113 414.1 640 41.2
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 3.4e-102 376.7 532 45.3
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 6.0e-99 365.9 320 62.5
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.1e-97 361.7 643 36.4
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.9e-90 336.7 336 56.0
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.1e-84 315.8 247 66.4
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.7e-83 313.9 308 56.2
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.5e-81 307.4 411 44.8
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.7e-80 303.5 284 57.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.4e-71 274.2 373 44.2
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 7.7e-62 242.7 711 28.6
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 4.4e-57 226.9 593 29.8
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-47 194.9 246 47.6
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.1e-47 194.1 194 58.8
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 4.1e-47 193.7 236 48.3
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.0e-45 189.1 616 27.6
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.5e-44 184.5 144 61.8
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 7.5e-41 172.9 233 45.9
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.4e-39 168.7 233 45.1
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 9.5e-36 156.0 177 49.2
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 2.2e-32 144.8 257 39.3
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 5.9e-30 136.7 107 64.5
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 7.8e-30 136.3 174 50.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.5e-28 132.1 99 66.7
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 9.5e-28 129.4 95 63.2
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.8e-27 127.9 571 23.5
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 2.6e-25 121.3 150 44.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.9e-24 117.9 83 65.1
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.4e-23 115.5 146 49.3
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 1.4e-23 115.5 350 29.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 5.8e-17 93.6 142 45.8
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.4e-15 89.0 77 63.6
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 2.1e-14 85.1 130 43.8
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.0e-13 82.8 108 49.1
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-13 82.0 106 46.2
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 6.6e-13 80.1 120 42.5
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.1e-12 79.3 142 34.5
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 2.5e-12 78.2 142 33.8
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.5e-12 78.2 142 33.8
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 3.3e-12 77.8 142 33.8
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 3.3e-12 77.8 142 33.8
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 9.5e-12 76.3 142 33.1
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.7e-08 64.3 44 63.6
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.9e-08 63.9 47 55.3
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 1.2e-06 59.3 119 27.7


User provided reference genes

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