Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 0.0e+00 1213.0 628 100.0
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.3e-292 1008.4 604 87.1
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 7.8e-288 993.4 604 87.4
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 8.6e-287 989.9 638 82.1
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 8.1e-285 983.4 536 96.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.6e-267 925.2 556 89.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.3e-223 779.2 536 78.4
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 4.2e-217 758.4 617 68.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 1.9e-209 733.0 619 64.9
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-208 729.2 614 66.1
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 4.7e-208 728.4 615 65.5
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 8.0e-208 727.6 629 65.0
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 5.2e-207 724.9 611 65.1
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 5.2e-207 724.9 613 64.8
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 6.7e-207 724.5 608 65.8
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 2.6e-206 722.6 623 64.4
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 2.8e-205 719.2 622 64.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 4.8e-205 718.4 606 64.7
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 6.3e-205 718.0 605 64.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 3.1e-204 715.7 612 64.1
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 5.3e-204 714.9 618 63.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.3e-202 710.3 622 64.0
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 1.3e-202 710.3 616 64.0
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.1e-201 707.2 605 63.8
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.5e-201 706.1 603 65.3
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 5.5e-201 704.9 615 62.8
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-200 701.8 629 62.6
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 1.0e-199 700.7 616 63.3
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 1.8e-199 699.9 618 62.9
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 8.8e-199 697.6 615 63.1
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 1.2e-198 697.2 620 62.7
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 3.4e-198 695.7 629 62.5
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 3.4e-198 695.7 607 62.3
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 3.4e-198 695.7 610 63.3
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.4e-198 695.7 607 63.4
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 4.4e-198 695.3 620 63.9
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.3e-197 693.7 622 62.1
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 6.3e-197 691.4 631 62.1
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 1.8e-196 689.9 609 62.7
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 3.1e-196 689.1 607 62.4
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 2.0e-195 686.4 608 62.3
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 2.7e-195 686.0 612 62.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 2.7e-195 686.0 611 63.2
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 3.5e-195 685.6 615 62.0
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 1.3e-194 683.7 612 62.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 1.3e-194 683.7 614 62.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 1.3e-194 683.7 627 60.9
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 2.9e-194 682.6 626 61.0
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 5.0e-194 681.8 652 59.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 1.5e-193 680.2 624 61.5
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 5.5e-193 678.3 618 62.3
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 5.5e-193 678.3 618 62.3
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 7.2e-193 677.9 629 62.0
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 9.5e-193 677.6 603 62.4
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 2.8e-192 676.0 620 60.8
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 6.1e-192 674.9 608 62.2
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 8.0e-192 674.5 610 62.5
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 2.3e-191 672.9 629 59.9
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 6.8e-191 671.4 606 61.9
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 6.8e-191 671.4 628 60.8
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 1.2e-190 670.6 607 62.8
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 1.5e-190 670.2 616 61.4
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 3.4e-190 669.1 647 58.9
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 2.8e-189 666.0 608 62.3
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 6.3e-189 664.8 625 61.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 1.8e-188 663.3 611 60.4
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 2.7e-187 659.4 621 59.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 4.5e-187 658.7 610 60.8
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 1.0e-186 657.5 625 60.0
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 2.9e-186 656.0 608 59.4
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 2.9e-186 656.0 608 60.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 3.8e-186 655.6 629 58.0
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 8.6e-186 654.4 617 59.8
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 1.5e-185 653.7 630 57.5
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 2.5e-185 652.9 608 60.0
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 2.5e-185 652.9 627 57.9
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 3.3e-185 652.5 608 59.2
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 3.3e-185 652.5 627 57.9
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 5.6e-185 651.7 629 57.9
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 7.3e-185 651.4 633 57.7
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 1.6e-184 650.2 634 58.4
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 8.0e-184 647.9 606 59.7
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 1.5e-182 643.7 633 57.5
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.9e-181 639.4 602 60.3
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 8.3e-181 637.9 614 59.6
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 2.7e-179 632.9 572 62.6
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 1.6e-176 623.6 618 58.7
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 8.3e-173 611.3 656 55.9
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 1.4e-172 610.5 612 58.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 1.6e-168 597.0 613 57.1
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 4.0e-167 592.4 606 56.1
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 2.9e-165 586.3 616 56.0
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 3.9e-162 575.9 534 60.7
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 4.0e-151 539.3 695 48.8
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 1.1e-145 521.2 666 47.9
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 2.1e-144 516.9 678 46.9
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-133 481.1 613 48.0
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 1.8e-119 434.1 354 66.4
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.9e-114 416.4 399 58.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.3e-112 411.4 480 53.8
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.3e-112 411.4 427 55.7
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 9.1e-111 405.2 690 39.0
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.7e-107 393.7 541 47.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.1e-91 339.3 193 81.9
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 2.1e-83 314.3 439 49.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.3e-80 302.8 348 51.1
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-77 294.7 346 49.7
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.3e-74 284.3 223 67.7
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.7e-72 278.1 254 60.2
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.3e-68 263.8 177 68.4
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 3.5e-62 243.8 621 31.7
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 4.6e-62 243.4 243 58.4
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.9e-61 240.4 179 67.0
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-60 238.8 233 53.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.5e-52 211.8 339 42.8
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 9.5e-52 209.1 339 41.6
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 3.6e-51 207.2 339 41.3
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.0e-50 203.8 339 41.0
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.6e-43 181.8 94 86.2
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 7.6e-41 172.9 181 56.4
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 3.3e-36 157.5 564 27.1
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.6e-30 137.1 122 58.2
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 7.9e-30 136.3 189 38.1
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.8e-27 127.1 176 40.3
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.9e-25 119.4 229 39.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.4e-23 115.5 71 80.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 5.4e-23 113.6 85 65.9
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.2e-22 112.5 58 91.4
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.5e-20 104.8 49 100.0
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 2.8e-19 101.3 121 47.9
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.5e-17 95.5 176 44.9
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 3.5e-06 57.8 47 66.0


User provided reference genes

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