Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g020110 Solanum pennellii HOM05D003564 ORTHO05D015539 1.3e-64 249.6 127 100.0
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 1.3e-45 186.4 102 94.1
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.3e-45 186.4 102 94.1
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 1.7e-45 186.0 102 94.1
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.6e-44 181.0 102 91.2
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.6e-44 181.0 102 91.2
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 7.3e-44 180.6 102 90.2
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 9.6e-44 180.3 102 90.2
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 9.6e-44 180.3 102 89.2
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 9.6e-44 180.3 102 89.2
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 9.6e-44 180.3 102 89.2
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 2.1e-43 179.1 102 89.2
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 2.1e-43 179.1 101 90.1
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 4.8e-43 177.9 101 88.1
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 4.8e-43 177.9 101 89.1
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 4.8e-43 177.9 102 88.2
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 6.2e-43 177.6 104 86.5
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 6.2e-43 177.6 101 89.1
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 8.1e-43 177.2 101 89.1
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 8.1e-43 177.2 101 88.1
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 8.1e-43 177.2 102 86.3
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 1.1e-42 176.8 102 87.3
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.1e-42 176.8 101 89.1
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.1e-42 176.8 101 88.1
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.1e-42 176.8 101 87.1
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.1e-42 176.8 101 88.1
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.4e-42 176.4 101 88.1
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 1.4e-42 176.4 102 86.3
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.4e-42 176.4 101 87.1
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 1.8e-42 176.0 101 85.1
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 1.8e-42 176.0 100 89.0
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 2.4e-42 175.6 102 86.3
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 2.4e-42 175.6 101 87.1
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 3.1e-42 175.3 101 85.1
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 3.1e-42 175.3 102 86.3
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.1e-42 175.3 102 85.3
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 3.1e-42 175.3 101 87.1
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 3.1e-42 175.3 101 88.1
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 3.1e-42 175.3 102 85.3
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 3.1e-42 175.3 101 87.1
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 84.2
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 84.2
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 87.1
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 87.1
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 86.1
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 4.0e-42 174.9 102 88.2
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 84.2
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 84.2
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 4.0e-42 174.9 101 87.1
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 5.3e-42 174.5 101 84.2
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 5.3e-42 174.5 101 84.2
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 5.3e-42 174.5 101 84.2
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 5.3e-42 174.5 101 84.2
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 5.3e-42 174.5 101 86.1
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 5.3e-42 174.5 101 87.1
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 6.9e-42 174.1 102 85.3
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 6.9e-42 174.1 101 87.1
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 6.9e-42 174.1 101 88.1
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 6.9e-42 174.1 101 86.1
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 6.9e-42 174.1 101 87.1
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.9e-42 174.1 102 89.2
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 6.9e-42 174.1 101 86.1
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 86.1
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 9.0e-42 173.7 101 84.2
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 9.0e-42 173.7 102 86.3
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 85.1
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 9.0e-42 173.7 100 86.0
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 86.1
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 87.1
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 87.1
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 87.1
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 9.0e-42 173.7 102 86.3
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 9.0e-42 173.7 101 84.2
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 1.2e-41 173.3 102 87.3
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 1.2e-41 173.3 98 88.8
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.2e-41 173.3 100 87.0
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.5e-41 172.9 101 87.1
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 1.5e-41 172.9 100 87.0
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 1.5e-41 172.9 101 86.1
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.5e-41 172.9 101 85.1
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 1.5e-41 172.9 101 85.1
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.0e-41 172.6 100 84.0
CAN.G311.69 Capsicum annuum HOM05D003564 ORTHO05D005332 2.0e-41 172.6 102 87.3
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.0e-41 172.6 101 87.1
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 2.0e-41 172.6 101 85.1
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 2.0e-41 172.6 101 85.1
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 2.0e-41 172.6 100 85.0
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 2.0e-41 172.6 100 85.0
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 2.0e-41 172.6 101 83.2
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 3.4e-41 171.8 102 85.3
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 3.4e-41 171.8 102 84.3
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 3.4e-41 171.8 100 87.0
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 3.4e-41 171.8 101 86.1
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 4.5e-41 171.4 101 85.1
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 4.5e-41 171.4 101 85.1
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 4.5e-41 171.4 101 85.1
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 4.5e-41 171.4 102 84.3
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 4.5e-41 171.4 102 82.4
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 4.5e-41 171.4 101 84.2
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 5.8e-41 171.0 101 82.2
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 5.8e-41 171.0 101 83.2
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 5.8e-41 171.0 101 86.1
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 5.8e-41 171.0 101 84.2
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 5.8e-41 171.0 101 86.1
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 5.8e-41 171.0 101 84.2
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 7.6e-41 170.6 101 85.1
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 9.9e-41 170.2 101 84.2
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 9.9e-41 170.2 101 85.1
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 9.9e-41 170.2 101 85.1
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 9.9e-41 170.2 101 85.1
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 9.9e-41 170.2 101 85.1
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 1.3e-40 169.9 101 84.2
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 1.3e-40 169.9 102 83.3
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.7e-40 169.5 101 85.1
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 1.7e-40 169.5 102 83.3
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 1.7e-40 169.5 101 85.1
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.2e-40 169.1 100 83.0
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.9e-40 168.7 101 83.2
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 2.9e-40 168.7 101 82.2
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 3.8e-40 168.3 102 82.4
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 4.9e-40 167.9 101 83.2
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 6.4e-40 167.5 101 83.2
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 8.4e-40 167.2 101 81.2
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 8.4e-40 167.2 101 83.2
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.1e-39 166.8 101 83.2
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 1.1e-39 166.8 101 83.2
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.1e-39 166.8 101 84.2
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.4e-39 166.4 101 83.2
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 1.4e-39 166.4 101 81.2
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 2.4e-39 165.6 101 82.2
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 5.4e-39 164.5 104 79.8
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 1.2e-38 163.3 101 81.2
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.2e-38 163.3 102 81.4
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 2.1e-38 162.5 101 82.2
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 2.7e-38 162.2 101 80.2
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 2.7e-38 162.2 101 80.2
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 3.5e-38 161.8 104 79.8
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 1.0e-37 160.2 101 77.2
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 1.0e-37 160.2 92 87.0
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.3e-37 159.8 131 67.2
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 1.1e-36 156.8 100 77.0
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 3.3e-36 155.2 100 76.0
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 9.6e-36 153.7 140 61.4
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.3e-35 153.3 85 89.4
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 9.0e-34 147.1 102 69.6
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 2.6e-33 145.6 102 70.6
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 4.9e-32 141.4 101 68.3
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 1.2e-30 136.7 102 64.7
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 2.7e-30 135.6 88 83.0
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.3e-29 132.5 101 68.3
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 4.3e-28 128.3 98 65.3
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 5.6e-28 127.9 78 84.6
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.3e-27 126.7 94 67.0
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 2.1e-27 125.9 75 86.7
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 3.7e-27 125.2 78 82.1
PSO761G0547 Papaver somniferum HOM05D003564 ORTHO05D005332 1.4e-26 123.2 79 81.0
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 4.0e-26 121.7 103 57.3
CSS0033456 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 7.6e-25 117.5 74 81.1
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 4.9e-24 114.8 100 58.0
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 2.7e-22 109.0 74 78.4
Lsat_1_v5_gn_2_75340 Lactuca sativa HOM05D003564 ORTHO05D015539 1.0e-21 107.1 72 76.4
Lsat_1_v5_gn_1_7420 Lactuca sativa HOM05D003564 ORTHO05D001424 1.3e-21 106.7 72 75.0
PSO673G0028 Papaver somniferum HOM05D003564 ORTHO05D015539 3.9e-21 105.1 78 67.9
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 6.7e-21 104.4 99 52.5
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 6.3e-19 97.8 73 72.6
Hma1.2p1_0760F.1_g214160 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 5.3e-18 94.7 62 77.4
Hma1.2p1_0014F.1_g009450 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.2e-17 93.6 62 77.4
Hma1.2p1_0213F.1_g090610 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 2.0e-17 92.8 62 75.8
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 7.9e-14 80.9 101 46.5
HanXRQChr14g0435401 Helianthus annuus HOM05D003564 ORTHO05D015539 1.3e-11 73.6 60 65.0
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 9.1e-10 67.4 103 38.8
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.0e-08 63.9 96 44.8
CAN.G170.129 Capsicum annuum HOM05D000030 ORTHO05D000031 7.2e-07 57.8 34 79.4


User provided reference genes

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