Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g005260 Solanum pennellii HOM05D015436 ORTHO05D018126 4.1e-142 508.1 260 100.0
Solyc01g009740.3 Solanum lycopersicum HOM05D015436 ORTHO05D018126 6.2e-98 361.3 251 77.3
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 4.2e-94 348.6 277 71.8
Sopen01g005230 Solanum pennellii HOM05D015436 ORTHO05D018126 4.0e-28 129.4 176 45.5
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 7.0e-17 92.0 83 55.4
Solyc01g009735.1 Solanum lycopersicum HOM05D015436 ORTHO05D018126 1.4e-12 77.8 125 40.8
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 2.2e-10 70.5 84 47.6
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 2.2e-10 70.5 82 46.3
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 4.9e-10 69.3 125 37.6
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 8.3e-10 68.6 90 44.4
Solyc01g009730.3 Solanum lycopersicum HOM05D015436 ORTHO05D018126 8.3e-10 68.6 68 51.5
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 1.1e-09 68.2 75 48.0
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 2.4e-09 67.0 76 46.1
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 3.2e-09 66.6 79 45.6
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 3.2e-09 66.6 90 43.3
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 7.0e-09 65.5 73 45.2
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 7.0e-09 65.5 83 42.2
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 9.2e-09 65.1 90 37.8
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 9.2e-09 65.1 88 40.9
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.1e-08 63.9 88 39.8
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 2.1e-08 63.9 210 28.1
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 2.1e-08 63.9 85 43.5
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 2.1e-08 63.9 82 43.9
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.1e-08 63.9 89 42.7
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 2.7e-08 63.5 85 43.5
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 2.7e-08 63.5 86 40.7
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.5e-08 63.2 87 43.7
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 3.5e-08 63.2 87 43.7
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 6.0e-08 62.4 88 37.5
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 1.0e-07 61.6 97 41.2
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 1.3e-07 61.2 99 37.4
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 1.7e-07 60.8 97 40.2
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 1.7e-07 60.8 97 40.2
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 3.0e-07 60.1 97 40.2
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 3.0e-07 60.1 88 37.5
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 3.0e-07 60.1 89 38.2
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 3.9e-07 59.7 193 30.6
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 5.0e-07 59.3 94 40.4
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 6.6e-07 58.9 105 33.3
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 6.6e-07 58.9 198 28.3
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 1.1e-06 58.2 104 35.6
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.1e-06 58.2 97 37.1
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 1.5e-06 57.8 95 38.9
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 1.5e-06 57.8 95 38.9
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 1.5e-06 57.8 85 37.6
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.9e-06 57.4 109 32.1
Solyc01g011170.1 Solanum lycopersicum HOM05D015436 ORTHO05D018126 1.9e-06 57.4 70 50.0
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.9e-06 57.4 121 35.5
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 2.5e-06 57.0 72 41.7
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 3.3e-06 56.6 141 31.2
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 4.3e-06 56.2 89 40.4
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 4.3e-06 56.2 89 40.4
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 5.6e-06 55.8 89 37.1
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 7.3e-06 55.5 82 39.0
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 7.3e-06 55.5 85 38.8
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 7.3e-06 55.5 88 37.5
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 7.3e-06 55.5 88 37.5
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 7.3e-06 55.5 75 42.7
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 9.5e-06 55.1 84 36.9
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 9.5e-06 55.1 197 28.9
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 9.5e-06 55.1 92 37.0
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 9.5e-06 55.1 92 37.0
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 9.5e-06 55.1 89 39.3


User provided reference genes

Program Settings