Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 0.0e+00 1290.0 671 100.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 0.0e+00 1281.5 671 99.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 0.0e+00 1183.3 672 92.0
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 0.0e+00 1141.3 664 88.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.6e-312 1074.3 664 85.4
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.1e-287 993.0 870 65.1
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.7e-285 985.7 679 75.4
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 4.0e-282 974.5 662 75.8
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.5e-281 972.6 657 76.4
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 4.1e-279 964.5 662 75.7
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 7.1e-279 963.8 676 74.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.2e-273 946.4 665 73.7
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.6e-273 945.3 662 73.4
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 3.8e-272 941.4 659 73.9
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 4.9e-272 941.0 672 72.5
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 4.1e-271 937.9 657 73.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 5.4e-271 937.6 659 72.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 7.1e-271 937.2 672 71.9
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.0e-269 933.3 658 73.7
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.0e-269 933.3 661 71.7
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.0e-269 933.3 679 71.7
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.0e-269 931.8 659 72.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.9e-269 931.4 651 74.0
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.0e-266 921.4 657 73.5
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 5.2e-266 921.0 659 72.1
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.5e-265 919.5 657 73.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.5e-265 919.5 666 71.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 9.9e-265 916.8 675 69.8
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.9e-264 915.2 656 73.6
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 8.4e-264 913.7 665 71.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.2e-263 911.8 681 70.0
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 7.1e-263 910.6 654 71.6
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 7.1e-263 910.6 663 70.4
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.6e-262 909.4 658 71.6
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.6e-262 909.4 662 70.5
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.1e-261 904.4 662 71.1
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 5.1e-261 904.4 657 71.8
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 4.3e-260 901.4 667 70.0
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 4.3e-260 901.4 669 69.7
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 9.6e-260 900.2 662 69.9
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.1e-259 899.0 669 69.8
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-258 896.7 659 70.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.4e-258 896.3 673 69.2
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 2.4e-258 895.6 662 70.2
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 4.0e-258 894.8 667 70.8
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 5.3e-258 894.4 654 71.9
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 9.0e-258 893.6 658 71.0
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 3.4e-257 891.7 669 69.2
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.7e-256 889.4 653 69.8
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.4e-255 886.3 662 70.1
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.4e-255 886.3 653 69.7
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.9e-255 885.9 694 68.0
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.9e-255 885.9 653 69.5
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.3e-253 879.0 657 69.4
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 3.3e-252 875.2 657 69.4
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 9.6e-252 873.6 664 68.8
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.3e-251 873.2 669 68.0
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.6e-251 872.8 653 68.3
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.6e-251 872.8 663 69.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.7e-251 871.7 654 68.8
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.2e-251 870.9 654 69.1
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 5.8e-249 864.4 653 68.3
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 3.8e-248 861.7 659 68.7
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 3.8e-248 861.7 661 68.7
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 4.9e-248 861.3 692 66.9
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 6.4e-248 860.9 695 66.8
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 4.2e-247 858.2 656 67.8
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 8.7e-245 850.5 659 68.9
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.9e-244 849.4 645 69.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.5e-241 838.2 657 67.0
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 6.5e-240 834.3 657 66.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 4.2e-239 831.6 661 65.4
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 7.9e-238 827.4 658 66.3
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.1e-237 824.7 692 64.5
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.3e-236 821.6 649 66.7
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 7.4e-236 820.8 612 70.8
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 4.8e-235 818.1 595 71.9
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 9.0e-234 813.9 665 63.6
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.3e-232 810.1 603 70.3
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.9e-232 808.9 677 64.0
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 5.1e-229 798.1 738 60.3
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 6.9e-226 787.7 618 68.0
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.0e-224 783.9 598 69.2
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.8e-224 781.9 599 69.1
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 7.9e-222 774.2 686 60.5
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 9.7e-212 740.7 676 58.7
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.6e-209 732.6 653 60.6
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.2e-206 723.8 704 57.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 7.7e-201 704.5 659 57.4
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.0e-192 677.6 499 71.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 6.3e-187 658.3 848 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.0e-185 653.3 666 53.2
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.1e-182 643.3 574 60.3
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 4.7e-182 642.1 507 66.5
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 4.1e-178 629.0 476 69.7
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.3e-168 596.7 567 55.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 7.1e-162 575.1 492 62.8
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.4e-157 560.1 604 53.3
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.3e-143 512.7 439 62.0
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.8e-133 480.7 441 59.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 6.5e-115 419.1 464 50.2
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-106 391.0 348 60.6
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.5e-79 299.3 205 75.1
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 7.5e-79 299.3 201 76.1
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.7e-78 297.0 411 43.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 2.3e-75 287.7 232 61.2
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 5.0e-75 286.6 450 41.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.9e-68 263.1 181 72.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.1e-65 254.6 381 43.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.1e-61 240.4 170 68.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 6.0e-60 236.5 284 50.4
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.9e-58 231.5 249 56.6
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.3e-46 192.2 142 69.0
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-42 176.4 427 29.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.3e-38 165.6 167 55.1
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.9e-38 164.5 145 60.0
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.0e-35 156.0 97 78.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.5e-34 152.1 95 80.0
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.3e-34 150.6 92 78.3
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.3e-33 149.1 147 55.8
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 7.6e-31 139.8 93 71.0
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.7e-30 138.7 90 73.3
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.4e-30 136.7 101 64.4
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-29 135.2 93 69.9
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.2e-29 134.0 79 82.3
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 8.7e-27 126.3 153 46.4
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.1e-25 121.7 422 29.6
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 4.8e-25 120.6 179 43.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 8.1e-25 119.8 83 72.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.9e-22 111.3 96 63.5
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.9e-21 108.6 84 65.5
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 3.0e-19 101.3 90 61.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.9e-18 98.6 165 37.0
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 6.2e-17 93.6 65 67.7
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.1e-16 92.8 67 70.1
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 9.0e-16 89.7 70 64.3
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 9.3e-13 79.7 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 9.3e-13 79.7 50 76.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-12 79.0 58 63.8
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.0e-11 76.3 61 65.6
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 8.7e-11 73.2 50 70.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 2.4e-08 65.1 89 47.2
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.7e-06 58.9 62 43.5


User provided reference genes

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