Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 9.0e-290 999.6 522 100.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.9e-289 996.9 522 99.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 3.9e-277 957.6 525 95.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 4.7e-262 907.5 529 88.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.4e-211 737.3 431 85.4
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.1e-209 732.6 431 84.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 6.5e-179 631.3 431 75.2
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.2e-170 601.3 486 64.0
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.7e-167 591.7 484 62.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.4e-167 591.3 485 63.3
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.2e-163 579.7 485 61.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.8e-163 578.9 497 60.6
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.5e-163 578.2 485 61.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.2e-162 574.7 430 66.7
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.1e-161 573.2 493 59.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 3.0e-160 569.3 484 58.1
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-159 566.6 484 60.5
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 9.7e-159 564.3 484 58.3
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.8e-158 562.8 484 59.7
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.8e-158 562.8 484 57.9
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.4e-157 560.5 482 59.3
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.8e-157 560.1 484 58.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.1e-157 559.3 491 61.1
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.1e-157 559.3 487 60.0
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 7.0e-157 558.1 491 58.0
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.0e-156 556.6 434 64.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.7e-155 553.5 486 59.5
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 8.5e-155 551.2 544 55.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.1e-154 550.8 489 58.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 7.2e-154 548.1 433 63.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 9.4e-154 547.7 489 59.5
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.2e-153 547.4 485 58.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.6e-153 547.0 490 57.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.1e-153 546.6 484 58.5
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.7e-153 546.2 484 57.0
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 3.6e-153 545.8 504 57.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.0e-152 544.3 492 57.7
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.0e-152 542.7 483 60.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.1e-151 540.8 488 56.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.0e-151 540.0 493 56.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 5.7e-151 538.5 488 55.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 9.7e-151 537.7 488 56.1
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.3e-150 537.3 483 57.8
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.2e-150 536.6 483 57.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.8e-150 536.2 483 58.2
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-149 534.3 474 58.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.1e-149 534.3 484 59.3
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.4e-149 533.1 553 53.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.0e-148 530.0 491 57.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.0e-148 530.0 487 56.1
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-147 527.7 485 56.5
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.0e-147 527.7 483 56.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.9e-147 526.2 424 61.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.9e-147 526.2 483 56.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 4.2e-146 522.3 484 56.2
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.2e-145 520.8 477 56.8
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.1e-145 520.0 482 55.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 4.7e-145 518.8 435 61.6
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.1e-145 518.5 483 56.3
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.8e-144 516.9 483 55.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.8e-144 516.9 485 55.9
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.0e-144 515.8 618 48.1
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 5.2e-144 515.4 482 55.2
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.0e-143 513.5 486 55.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 3.3e-143 512.7 520 53.8
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.3e-143 512.7 490 54.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.3e-143 512.7 490 54.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.3e-143 512.7 493 55.6
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.4e-143 512.3 441 59.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.4e-143 512.3 489 55.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.7e-143 511.9 482 55.4
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.5e-143 511.5 494 54.9
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.3e-142 510.8 424 60.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.2e-142 510.0 485 54.6
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.8e-142 509.6 496 55.0
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 8.3e-142 508.1 424 60.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.1e-141 507.7 480 56.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.4e-141 507.3 486 54.9
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.4e-141 507.3 432 58.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.4e-141 507.3 444 57.7
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.1e-141 506.1 485 54.6
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.2e-140 504.2 497 52.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.7e-140 503.1 445 59.1
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 7.7e-140 501.5 435 58.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.5e-139 498.4 492 54.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 8.5e-139 498.0 483 54.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.2e-138 495.0 485 54.4
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.2e-137 494.2 481 52.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.1e-137 491.9 472 57.0
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.4e-136 490.7 485 52.2
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.0e-136 489.6 482 53.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.0e-136 489.2 484 51.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.8e-136 488.4 433 59.6
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.6e-135 486.5 486 51.6
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.5e-135 485.0 445 56.4
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.7e-134 482.6 484 50.4
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 4.8e-134 482.3 424 58.5
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.4e-133 480.7 482 51.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.1e-133 479.6 444 55.6
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.4e-133 478.8 444 55.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.4e-133 478.8 433 56.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.6e-132 477.2 445 55.3
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.6e-132 477.2 482 52.5
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.5e-132 476.1 433 55.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 3.5e-132 476.1 446 54.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 3.5e-132 476.1 446 54.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.5e-132 476.1 447 55.7
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.5e-132 476.1 454 54.0
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-132 475.7 446 54.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 4.5e-132 475.7 454 54.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 5.9e-132 475.3 485 52.0
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 5.9e-132 475.3 445 55.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 5.9e-132 475.3 485 52.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 5.9e-132 475.3 485 52.0
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.7e-132 474.9 558 48.6
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.8e-131 472.6 486 52.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-130 471.1 486 52.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-130 470.3 433 55.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.5e-130 469.9 454 54.4
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.2e-130 468.4 454 54.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.2e-129 467.6 450 55.3
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.6e-129 467.2 433 53.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.1e-129 466.8 425 56.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-129 466.5 448 55.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.1e-129 465.3 453 52.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.8e-128 463.8 468 52.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-128 463.8 453 52.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-128 463.4 470 52.3
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.0e-128 463.0 421 56.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-127 461.1 448 54.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-127 461.1 432 55.1
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.3e-126 454.9 346 65.3
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.6e-124 450.7 488 51.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.5e-124 449.1 435 52.9
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.5e-122 443.4 501 50.1
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 7.3e-122 441.8 492 49.6
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 8.9e-120 434.9 417 53.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.7e-118 429.5 370 58.9
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 9.2e-117 424.9 375 57.9
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.8e-116 421.8 425 51.5
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 8.9e-112 408.3 370 56.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 7.5e-111 405.2 367 56.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.1e-109 401.4 417 51.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.4e-109 399.1 419 50.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.9e-102 375.9 404 51.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.5e-100 369.8 326 57.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 8.4e-94 348.6 333 55.6
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-79 301.6 221 65.6
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-73 280.4 221 61.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.6e-68 264.6 295 51.5
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 6.7e-67 259.2 230 57.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.6e-63 247.3 245 54.3
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.0e-62 245.4 267 50.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.3e-59 235.0 339 41.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 3.1e-56 223.8 331 41.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.0e-54 218.8 263 47.1
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.9e-54 217.2 117 92.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 6.3e-49 199.5 457 33.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.5e-46 189.5 446 33.9
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 9.4e-37 159.1 265 40.0
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.8e-33 147.5 195 44.1
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.2e-27 126.7 133 51.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 6.8e-27 126.3 656 22.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-26 124.4 111 57.7
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.6e-26 124.4 314 29.3
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.8e-25 120.2 99 57.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-20 105.5 124 46.8
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-15 88.6 100 48.0
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.5e-15 87.4 109 48.6
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.3e-11 74.7 47 66.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.4e-10 70.9 385 23.1
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.0e-08 63.2 52 59.6
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.9e-06 57.4 35 74.3


User provided reference genes

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