Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g006460 Solanum pennellii HOM05D001292 ORTHO05D001202 4.4e-100 367.9 173 100.0
Solyc11g017040.2 Solanum lycopersicum HOM05D001292 ORTHO05D001202 2.5e-18 96.3 45 93.3
CAN.G61.18 Capsicum annuum HOM05D001292 ORTHO05D001202 9.4e-18 94.4 45 91.1
Sopen11g009030 Solanum pennellii HOM05D001292 ORTHO05D001202 1.6e-17 93.6 45 91.1
Peaxi162Scf00495g00216 Petunia axillaris HOM05D001292 ORTHO05D001202 4.0e-16 89.0 45 84.4
Nitab4.5_0000159g0110 Nicotiana tabacum HOM05D001292 ORTHO05D001202 5.7e-15 85.1 45 84.4
Sopen12g009550 Solanum pennellii HOM05D000006 ORTHO05D000001 6.1e-09 65.1 30 100.0
Cc00_g07670 Coffea canephora HOM05D001292 ORTHO05D001202 1.4e-08 63.9 44 68.2
HanXRQChr15g0484871 Helianthus annuus HOM05D001292 ORTHO05D001202 6.8e-08 61.6 89 39.3
Hma1.2p1_0125F.1_g058890 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 6.8e-08 61.6 66 47.0
ATR0767G167 Amborella trichopoda HOM05D001292 ORTHO05D001202 8.8e-08 61.2 68 44.1
CANSAT54G0160 Cannabis sativa HOM05D001292 ORTHO05D001202 8.8e-08 61.2 58 55.2
Lj6g0027662 Lotus japonicus HOM05D001292 ORTHO05D001202 1.2e-07 60.8 40 62.5
Phvul.006G202100 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 1.2e-07 60.8 43 62.8
Ca_00162_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 1.5e-07 60.5 43 62.8
Lalb_Chr18g0060411 Lupinus albus HOM05D001292 ORTHO05D001202 1.5e-07 60.5 43 60.5
Hma1.2p1_0010F.1_g006660 Hydrangea macrophylla HOM05D001292 ORTHO05D001202 2.0e-07 60.1 45 62.2
Lsat_1_v5_gn_9_75061 Lactuca sativa HOM05D001292 ORTHO05D001202 2.0e-07 60.1 40 67.5
MBI02_g05218_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D013696 2.0e-07 60.1 45 60.0
Peaxi162Scf00299g00720 Petunia axillaris HOM05D001292 ORTHO05D001202 2.0e-07 60.1 37 67.6
Sabra17G0029900 Salix brachista HOM05D001292 ORTHO05D001202 2.0e-07 60.1 44 63.6
VMungo0540G0648 Vigna mungo HOM05D001292 ORTHO05D001202 2.0e-07 60.1 43 62.8
Glyma.15G058100 Glycine max HOM05D001292 ORTHO05D001202 2.6e-07 59.7 40 65.0
Glyma.13G256800 Glycine max HOM05D001292 ORTHO05D001202 3.4e-07 59.3 35 71.4
Potri.017G044000 Populus trichocarpa HOM05D001292 ORTHO05D001202 3.4e-07 59.3 40 62.5
Dinv44858 Davidia involucrata HOM05D001292 ORTHO05D001202 4.4e-07 58.9 45 57.8
RcHm_v2.0_Chr6g0271021 Rosa chinensis HOM05D001292 ORTHO05D001202 4.4e-07 58.9 40 62.5
Manes.10G098700 Manihot esculenta HOM05D001292 ORTHO05D001202 7.5e-07 58.2 40 62.5
TPR.G9503 Trifolium pratense HOM05D001292 ORTHO05D001202 7.5e-07 58.2 44 56.8
TAR625G0946 Trochodendron aralioides HOM05D001292 ORTHO05D001202 7.5e-07 58.2 38 63.2
MSTRG.24428 Avicennia marina HOM05D001292 ORTHO05D001202 9.8e-07 57.8 35 74.3
MBI07_g34624_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 9.8e-07 57.8 40 60.0
MBI16_g27584_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 9.8e-07 57.8 40 60.0
RcHm_v2.0_Chr7g0236781 Rosa chinensis HOM05D001292 ORTHO05D001202 9.8e-07 57.8 38 63.2
Hund27020 Selenicereus undatus HOM05D001292 ORTHO05D001202 9.8e-07 57.8 40 57.5
AUR62019044 Chenopodium quinoa HOM05D001292 ORTHO05D001202 1.3e-06 57.4 40 57.5
ECA232G4048 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.3e-06 57.4 45 62.2
FvH4_5g35390 Fragaria vesca HOM05D001292 ORTHO05D001202 1.3e-06 57.4 38 63.2
FAN04G0518 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.3e-06 57.4 38 63.2
FAN08G0616 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.3e-06 57.4 38 63.2
FAN13G3173 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.3e-06 57.4 38 63.2
FAN18G2083 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.3e-06 57.4 38 63.2
Actinidia19631 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.7e-06 57.0 45 57.8
arahy.Tifrunner.gnm1.ann1.6V6D2H Arachis hypogaea HOM05D001292 ORTHO05D001202 1.7e-06 57.0 44 56.8
arahy.Tifrunner.gnm1.ann1.72ZBT8 Arachis hypogaea HOM05D001292 ORTHO05D001202 1.7e-06 57.0 44 56.8
DCAR_009562 Daucus carota HOM05D001292 ORTHO05D045070 1.7e-06 57.0 40 62.5
HanXRQChr05g0163371 Helianthus annuus HOM05D001292 ORTHO05D001202 1.7e-06 57.0 45 62.2
Lalb_Chr11g0065021 Lupinus albus HOM05D001292 ORTHO05D001202 1.7e-06 57.0 44 56.8
Nn5g29887 Nelumbo nucifera HOM05D001292 ORTHO05D001202 1.7e-06 57.0 40 62.5
Sopen12g009960 Solanum pennellii HOM05D000006 ORTHO05D000001 1.7e-06 57.0 37 73.0
Atru.chr6.1255 Acer truncatum HOM05D001292 ORTHO05D001202 2.2e-06 56.6 40 57.5
Cpa.g.sc21.12 Carica papaya HOM05D001292 ORTHO05D001202 2.2e-06 56.6 40 55.0
Gohir.A05G219700 Gossypium hirsutum HOM05D001292 ORTHO05D001202 2.2e-06 56.6 40 57.5
Manes.07G038300 Manihot esculenta HOM05D001292 ORTHO05D001202 2.2e-06 56.6 58 50.0
Nn1g05565 Nelumbo nucifera HOM05D001292 ORTHO05D001202 2.2e-06 56.6 38 60.5
Psat1g215560 Pisum sativum HOM05D001292 ORTHO05D001202 2.2e-06 56.6 40 62.5
Sabra07G0094200 Salix brachista HOM05D001292 ORTHO05D001202 2.2e-06 56.6 40 57.5
Glyma.18G281500 Glycine max HOM05D001292 ORTHO05D001202 2.8e-06 56.2 51 54.9
TPR.G36050 Trifolium pratense HOM05D001292 ORTHO05D001202 2.8e-06 56.2 49 53.1
AUR62027884 Chenopodium quinoa HOM05D001292 ORTHO05D001202 3.7e-06 55.8 40 55.0
DCAR_009566 Daucus carota HOM05D001292 ORTHO05D045070 3.7e-06 55.8 40 60.0
FvH4_2g11700 Fragaria vesca HOM05D001292 ORTHO05D001202 3.7e-06 55.8 32 75.0
FAN15G0696 Fragaria x ananassa HOM05D001292 ORTHO05D001202 3.7e-06 55.8 32 75.0
FAN24G0423 Fragaria x ananassa HOM05D001292 ORTHO05D001202 3.7e-06 55.8 32 75.0
Glyma.06G095600 Glycine max HOM05D001292 ORTHO05D001202 3.7e-06 55.8 44 56.8
Gohir.D05G222200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 3.7e-06 55.8 40 57.5
Gorai.009G229600 Gossypium raimondii HOM05D001292 ORTHO05D001202 3.7e-06 55.8 40 57.5
Thecc.02G129400 Theobroma cacao HOM05D001292 ORTHO05D001202 3.7e-06 55.8 40 57.5
Thecc.08G070600 Theobroma cacao HOM05D001292 ORTHO05D001202 3.7e-06 55.8 40 57.5
HPP92_027860 Vanilla planifolia HOM05D001292 ORTHO05D001202 3.7e-06 55.8 37 64.9
DCAR_012858 Daucus carota HOM05D001292 ORTHO05D001202 4.9e-06 55.5 40 57.5
Dinv15996 Davidia involucrata HOM05D001292 ORTHO05D001202 4.9e-06 55.5 40 57.5
Glyma.04G093800 Glycine max HOM05D001292 ORTHO05D001202 4.9e-06 55.5 44 56.8
Lj1g0015973 Lotus japonicus HOM05D001292 ORTHO05D001202 4.9e-06 55.5 45 55.6
Lalb_Chr08g0242481 Lupinus albus HOM05D001292 ORTHO05D001202 4.9e-06 55.5 44 56.8
Medtr3g100390 Medicago truncatula HOM05D001292 ORTHO05D001202 4.9e-06 55.5 44 56.8
Sed0002698 Sechium edule HOM05D001292 ORTHO05D001202 4.9e-06 55.5 40 57.5
Actinidia29624 Actinidia chinensis HOM05D001292 ORTHO05D001202 6.3e-06 55.1 45 55.6
CSS0010703 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 57.5
CDE01G0387 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 6.3e-06 55.1 35 65.7
COL.COLO4_35242 Corchorus olitorius HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 55.0
Thhalv10006645m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 60.0
Gohir.A01G132400 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.3e-06 55.1 45 55.6
Gohir.D01G117200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 6.3e-06 55.1 45 55.6
Gorai.002G142500 Gossypium raimondii HOM05D001292 ORTHO05D001202 6.3e-06 55.1 45 55.6
Lsat_1_v5_gn_1_8661 Lactuca sativa HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 62.5
Lsat_1_v5_gn_1_98460 Lactuca sativa HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 62.5
Lsat_1_v5_gn_4_183321 Lactuca sativa HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 62.5
Lsat_1_v5_gn_6_56301 Lactuca sativa HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 62.5
Lsat_1_v5_gn_7_76281 Lactuca sativa HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 62.5
Lsat_1_v5_gn_9_81600 Lactuca sativa HOM05D001292 ORTHO05D001202 6.3e-06 55.1 40 62.5
vmacro04653 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 6.3e-06 55.1 38 57.9
CDE02G3610 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 8.3e-06 54.7 34 67.6
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 8.3e-06 54.7 53 49.1
ClCG09G016070 Citrullus lanatus HOM05D001292 ORTHO05D001202 8.3e-06 54.7 40 60.0
Lsat_1_v5_gn_3_95181 Lactuca sativa HOM05D001292 ORTHO05D001202 8.3e-06 54.7 35 65.7
Oeu041818.1 Olea europaea HOM05D001292 ORTHO05D001202 8.3e-06 54.7 40 62.5
Potri.007G115400 Populus trichocarpa HOM05D001292 ORTHO05D001202 8.3e-06 54.7 40 57.5


User provided reference genes

Program Settings