Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-136 490.0 248 100.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.1e-111 406.0 250 85.2
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 9.7e-109 397.1 250 84.0
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 2.4e-107 392.5 250 83.6
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 1.9e-72 276.6 251 65.3
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.2e-53 214.2 175 66.3
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 2.6e-53 213.0 175 65.7
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.6e-53 213.0 175 65.7
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 3.4e-53 212.6 175 65.7
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 9.9e-53 211.1 175 65.7
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 9.9e-53 211.1 175 65.7
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.3e-52 210.7 175 64.0
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 3.0e-49 199.5 174 62.6
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.9e-49 199.1 174 62.1
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 2.5e-48 196.4 174 59.8
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 9.6e-48 194.5 173 61.3
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.3e-47 194.1 174 59.8
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 1.6e-47 193.7 170 61.8
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 2.1e-47 193.4 170 61.2
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.8e-47 193.0 171 60.8
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 3.6e-47 192.6 174 59.8
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 6.2e-47 191.8 171 59.1
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 6.2e-47 191.8 174 59.2
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 8.1e-47 191.4 175 60.0
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.1e-46 191.0 174 58.6
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.4e-46 190.7 218 51.4
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 5.3e-46 188.7 174 59.2
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 9.0e-46 188.0 173 58.4
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 1.2e-45 187.6 174 58.6
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.2e-45 187.6 174 59.2
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 1.5e-45 187.2 174 58.0
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 2.0e-45 186.8 173 57.8
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 3.4e-45 186.0 174 56.3
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 4.5e-45 185.7 172 57.6
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 4.5e-45 185.7 174 55.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 4.5e-45 185.7 172 57.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 4.5e-45 185.7 172 57.6
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 5.8e-45 185.3 172 57.6
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 7.6e-45 184.9 174 56.9
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 7.6e-45 184.9 174 55.7
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 7.6e-45 184.9 173 57.8
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 9.9e-45 184.5 170 57.6
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 9.9e-45 184.5 172 57.6
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.3e-44 184.1 172 57.6
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 2.2e-44 183.3 170 58.8
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 2.2e-44 183.3 174 56.3
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.9e-44 183.0 174 59.2
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 2.9e-44 183.0 174 57.5
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 3.8e-44 182.6 174 56.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 3.8e-44 182.6 174 56.3
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 3.8e-44 182.6 174 59.2
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 4.9e-44 182.2 170 57.1
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 6.4e-44 181.8 184 54.3
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 6.4e-44 181.8 174 55.7
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 8.4e-44 181.4 170 57.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.1e-43 181.0 173 54.9
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.1e-43 181.0 174 54.6
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 1.1e-43 181.0 174 56.9
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.4e-43 180.6 174 55.7
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.9e-43 180.3 174 55.7
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 4.2e-43 179.1 174 53.4
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.4e-43 178.7 174 55.2
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.4e-43 178.7 174 56.3
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.2e-42 177.6 174 52.9
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.2e-42 177.6 174 56.9
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.6e-42 177.2 173 53.8
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 2.1e-42 176.8 168 57.1
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.1e-42 176.8 174 55.2
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.7e-42 176.4 171 56.7
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 6.0e-42 175.3 172 55.2
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 6.0e-42 175.3 172 55.2
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 6.0e-42 175.3 172 55.2
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 6.0e-42 175.3 172 55.2
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 6.0e-42 175.3 170 55.9
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.9e-42 174.9 172 55.8
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 7.9e-42 174.9 174 52.3
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 1.0e-41 174.5 170 55.3
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 1.8e-41 173.7 174 52.3
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.8e-41 173.7 172 55.2
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 2.3e-41 173.3 124 67.7
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.3e-41 173.3 174 53.4
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.3e-41 173.3 177 53.7
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 2.3e-41 173.3 177 53.7
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 3.0e-41 172.9 172 56.4
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 3.0e-41 172.9 180 52.2
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 5.1e-41 172.2 122 66.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 5.1e-41 172.2 171 56.1
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.1e-40 171.0 172 54.1
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.1e-40 171.0 172 54.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 1.5e-40 170.6 175 52.0
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.5e-40 170.6 174 55.7
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 2.5e-40 169.9 175 52.0
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 2.5e-40 169.9 175 52.0
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 2.5e-40 169.9 168 53.6
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 3.3e-40 169.5 175 52.0
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 3.3e-40 169.5 175 52.0
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 3.3e-40 169.5 167 55.7
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 3.3e-40 169.5 172 52.9
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 4.3e-40 169.1 175 52.0
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 5.6e-40 168.7 174 55.2
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 5.6e-40 168.7 160 58.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 7.4e-40 168.3 176 54.5
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.6e-39 167.2 174 50.0
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.6e-39 167.2 129 62.0
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 2.8e-39 166.4 124 66.9
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 6.2e-39 165.2 162 56.2
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 8.1e-39 164.9 137 62.0
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.1e-38 164.5 170 51.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.8e-38 163.7 120 65.8
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.2e-37 161.0 160 54.4
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.4e-37 159.5 159 54.1
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 5.8e-37 158.7 174 52.9
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 2.2e-36 156.8 170 48.8
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 4.2e-35 152.5 124 57.3
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.2e-34 151.0 171 53.8
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.0e-33 147.9 124 54.8
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.8e-33 147.1 143 58.7
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 8.7e-33 144.8 169 48.5
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.1e-32 144.4 172 46.5
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 5.6e-32 142.1 177 43.5
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 3.7e-31 139.4 142 55.6
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 4.0e-30 136.0 174 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 1.2e-29 134.4 167 44.9
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 5.8e-29 132.1 122 52.5
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 2.9e-28 129.8 99 66.7
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 8.4e-28 128.3 160 48.1
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.5e-27 126.7 167 49.1
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 4.5e-21 105.9 79 62.0
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 2.3e-17 93.6 175 40.0
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.4e-11 74.3 83 55.4
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.9e-11 73.9 90 51.1
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 9.4e-11 71.6 56 62.5


User provided reference genes

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