Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 0.0e+00 1260.4 619 100.0
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 0.0e+00 1237.6 619 98.1
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 0.0e+00 1100.9 626 87.4
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 2.7e-309 1064.7 635 84.7
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 5.0e-303 1043.9 623 83.3
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 5.7e-299 1030.4 627 81.7
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 8.5e-295 1016.5 633 80.9
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.0e-292 1009.6 611 81.5
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 5.3e-289 997.3 630 78.9
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.6e-288 995.0 633 79.9
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.4e-288 994.6 575 84.0
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 4.2e-286 987.6 575 84.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 7.4e-283 976.9 627 77.2
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 3.7e-282 974.5 607 77.6
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.1e-281 971.1 650 74.5
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 5.9e-280 967.2 597 78.4
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 5.9e-280 967.2 607 77.1
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.9e-279 964.9 612 76.5
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 8.5e-279 963.4 653 73.2
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.9e-278 962.2 577 79.9
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 2.5e-278 961.8 643 73.4
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 4.7e-277 957.6 649 73.3
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 6.1e-277 957.2 645 73.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.8e-276 955.7 575 79.1
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 3.0e-276 954.9 650 73.7
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 5.2e-276 954.1 650 73.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 5.2e-276 954.1 573 79.1
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.1e-275 953.0 579 78.8
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.1e-275 953.0 585 78.1
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 2.0e-275 952.2 594 77.4
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.0e-275 952.2 642 73.4
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.6e-275 951.8 584 78.1
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.4e-275 951.0 635 74.2
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 5.7e-275 950.7 588 78.2
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 5.7e-275 950.7 659 73.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.5e-275 950.3 652 73.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 9.7e-275 949.9 639 73.6
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.3e-274 947.2 642 72.9
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 6.3e-274 947.2 640 73.1
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 8.2e-274 946.8 637 73.3
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.2e-274 946.8 642 72.7
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.1e-273 946.4 639 73.2
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.4e-273 945.3 643 72.5
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 2.4e-273 945.3 564 79.3
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 3.1e-273 944.9 644 72.0
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.1e-273 944.5 621 74.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 4.1e-273 944.5 656 71.3
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 4.1e-273 944.5 593 77.1
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 4.1e-273 944.5 655 72.8
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 5.3e-273 944.1 566 79.5
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 5.3e-273 944.1 585 77.1
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 5.3e-273 944.1 650 72.3
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.2e-272 943.0 671 71.4
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 3.5e-272 941.4 641 72.7
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 4.5e-272 941.0 598 75.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.0e-271 939.9 639 73.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.0e-271 939.9 582 76.3
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.3e-271 939.5 633 73.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.8e-271 937.9 545 81.5
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 6.5e-271 937.2 578 77.2
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 8.5e-271 936.8 574 78.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 8.5e-271 936.8 561 79.3
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.1e-270 936.4 574 77.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.5e-270 936.0 643 72.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.2e-270 934.5 580 76.7
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 4.2e-270 934.5 577 77.5
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 5.5e-270 934.1 586 76.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 9.4e-270 933.3 586 76.6
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.7e-269 931.8 621 72.0
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 3.6e-269 931.4 631 72.3
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.6e-269 931.4 580 76.7
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.8e-268 929.1 618 73.5
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 4.0e-268 927.9 582 75.4
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 5.2e-268 927.5 563 79.0
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.5e-267 926.0 626 73.2
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.5e-267 926.0 621 71.3
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.5e-267 926.0 573 77.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.6e-267 925.2 580 76.0
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 3.4e-267 924.9 581 77.6
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 3.7e-266 921.4 644 70.8
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 4.8e-266 921.0 594 75.1
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 6.3e-266 920.6 615 71.5
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.4e-265 917.5 626 72.7
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 7.0e-265 917.1 580 74.8
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.2e-264 916.4 612 71.9
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.7e-264 915.2 543 78.8
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 2.9e-263 911.8 576 74.7
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 3.8e-263 911.4 616 71.3
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 3.8e-263 911.4 545 78.3
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 3.8e-263 911.4 628 71.8
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 6.5e-263 910.6 583 73.9
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 6.5e-263 910.6 576 74.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 6.5e-263 910.6 531 80.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 8.5e-263 910.2 624 71.0
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.9e-262 909.1 624 71.2
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 2.5e-262 908.7 622 71.4
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.5e-262 908.7 548 77.6
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 5.5e-262 907.5 621 70.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 4.0e-260 901.4 528 81.2
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.3e-258 896.3 588 74.7
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.7e-258 896.0 736 63.6
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.2e-258 895.6 582 72.9
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.8e-253 878.6 616 70.5
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 4.7e-253 877.9 616 70.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.0e-252 876.7 617 69.9
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-252 876.3 567 74.1
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.4e-252 876.3 545 76.1
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 4.4e-251 871.3 618 69.3
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.7e-248 862.1 532 76.1
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.9e-246 855.9 570 74.0
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.4e-243 845.1 551 72.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 2.0e-240 835.9 617 66.9
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.3e-238 828.2 635 67.2
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.9e-234 814.7 600 69.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.7e-231 806.2 540 74.6
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.9e-226 788.9 584 63.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.5e-222 776.5 536 70.7
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.5e-222 775.8 576 64.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 4.3e-222 775.0 448 82.6
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 4.7e-221 771.5 549 66.5
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.3e-218 763.5 448 80.8
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.1e-213 744.2 439 79.7
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 2.3e-207 726.1 511 68.7
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.5e-187 660.2 497 67.2
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.7e-186 656.8 446 70.6
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 6.7e-183 644.8 538 58.2
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 3.0e-167 592.8 361 77.0
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.8e-156 557.0 344 76.5
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 5.9e-155 552.0 561 53.8
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.9e-146 523.1 554 49.8
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.6e-144 517.3 369 70.7
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 3.0e-135 486.5 417 61.6
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 7.5e-134 481.9 539 51.6
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 9.8e-134 481.5 280 78.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 6.6e-130 468.8 278 78.8
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 7.5e-126 455.3 324 71.3
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.1e-115 420.6 568 43.7
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 4.7e-104 382.9 286 64.0
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.4e-95 354.0 643 35.8
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.0e-82 312.0 593 36.6
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 2.3e-82 310.8 263 63.1
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.9e-81 307.8 568 36.3
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 2.1e-80 304.3 184 75.5
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.8e-79 301.2 188 71.3
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 1.6e-75 288.1 179 75.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.0e-74 285.4 579 33.9
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-74 284.6 179 74.3
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 5.7e-73 279.6 167 77.2
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 2.5e-68 264.2 603 32.8
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.8e-61 240.4 592 31.1
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.1e-58 229.9 140 76.4
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 6.7e-58 229.6 321 43.0
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.6e-57 227.6 155 67.7
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 4.4e-49 200.3 120 83.3
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.2e-44 183.7 117 74.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 6.1e-43 179.9 100 86.0
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.4e-39 167.9 149 57.0
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-38 165.6 118 66.9
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 2.9e-37 161.0 107 71.0
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.7e-30 137.9 106 63.2
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 3.5e-30 137.5 77 80.5
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.3e-29 135.6 90 71.1
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 6.1e-27 126.7 67 85.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.0e-26 125.9 65 89.2
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.8e-25 119.4 137 46.0
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.5e-20 104.8 64 78.1
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.6e-11 75.5 120 41.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-10 72.0 54 66.7
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.2e-09 69.3 51 64.7
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 4.4e-09 67.4 59 55.9
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 9.8e-09 66.2 70 48.6
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-07 62.4 38 68.4


User provided reference genes

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