Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g062733.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 4.0e-78 294.7 146 100.0
Solyc09g072730.2 Solanum lycopersicum HOM05D009408 ORTHO05D000309 1.4e-75 286.2 146 97.3
Solyc10g055427.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 1.9e-75 285.8 146 96.6
PGSC0003DMG400008721 Solanum tuberosum HOM05D009408 ORTHO05D000309 6.2e-71 270.8 146 89.7
PGSC0003DMG400029733 Solanum tuberosum HOM05D009408 ORTHO05D000309 1.2e-69 266.5 146 89.0
PGSC0003DMG400041825 Solanum tuberosum HOM05D009408 ORTHO05D000309 1.7e-68 262.7 146 87.7
Solyc03g096303.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 8.1e-55 217.2 119 90.8
Solyc10g080784.1 Solanum lycopersicum HOM05D008169 ORTHO05D004497 1.8e-49 199.5 107 88.8
PGSC0003DMG400014126 Solanum tuberosum HOM05D009408 ORTHO05D000309 2.8e-47 192.2 106 85.8
Solyc08g150132.1 Solanum lycopersicum HOM05D009408 ORTHO05D000309 7.1e-43 177.6 91 92.3
PGSC0003DMG400044631 Solanum tuberosum HOM05D009408 ORTHO05D004497 2.7e-34 149.1 98 79.6
PGSC0003DMG400044971 Solanum tuberosum HOM05D009408 ORTHO05D004497 3.3e-32 142.1 131 61.8
CAN.G275.3 Capsicum annuum HOM05D009408 ORTHO05D004497 3.7e-31 138.7 152 48.0
CAN.G637.19 Capsicum annuum HOM05D009408 ORTHO05D004497 1.3e-28 130.2 152 47.4
CAN.G1343.17 Capsicum annuum HOM05D009408 ORTHO05D000309 8.5e-28 127.5 152 45.4
CAN.G176.8 Capsicum annuum HOM05D009408 ORTHO05D000309 1.4e-27 126.7 152 46.1
CAN.G1801.2 Capsicum annuum HOM05D009408 ORTHO05D000309 7.2e-27 124.4 152 45.4
CAN.G548.7 Capsicum annuum HOM05D009408 ORTHO05D000309 2.1e-26 122.9 151 43.7
CAN.G98.25 Capsicum annuum HOM05D009408 ORTHO05D000309 2.1e-26 122.9 152 43.4
CAN.G490.13 Capsicum annuum HOM05D009408 ORTHO05D000309 2.7e-26 122.5 152 43.4
CAN.G11.43 Capsicum annuum HOM05D009408 ORTHO05D000309 2.3e-25 119.4 149 44.3
CAN.G1459.18 Capsicum annuum HOM05D009408 ORTHO05D000309 6.7e-25 117.9 150 43.3
CAN.G781.1 Capsicum annuum HOM05D009408 ORTHO05D000309 7.4e-24 114.4 145 43.4
CAN.G1014.58 Capsicum annuum HOM05D009408 ORTHO05D000309 6.3e-23 111.3 145 42.8
CAN.G100.78 Capsicum annuum HOM05D009408 ORTHO05D004497 5.3e-22 108.2 152 42.1
CAN.G1275.6 Capsicum annuum HOM05D009408 ORTHO05D000309 2.9e-20 102.4 145 42.1
CAN.G685.20 Capsicum annuum HOM05D009408 ORTHO05D000309 2.9e-20 102.4 145 42.1
CAN.G1538.14 Capsicum annuum HOM05D009408 ORTHO05D004497 1.1e-16 90.5 146 37.7
CAN.G410.3 Capsicum annuum HOM05D009408 ORTHO05D004497 1.4e-14 83.6 83 54.2
Nitab4.5_0029094g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.8e-14 83.2 80 51.2
Nitab4.5_0011664g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.1e-14 82.0 80 50.0
Nitab4.5_0001839g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.6e-13 80.1 80 47.5
Nitab4.5_0001288g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.5e-13 79.0 81 46.9
Nitab4.5_0003518g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.0e-12 77.4 80 47.5
Nitab4.5_0001839g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.7e-12 76.6 79 46.8
Nitab4.5_0029284g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.0e-12 75.1 79 40.5
Nitab4.5_0013592g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.5e-11 71.6 80 45.0
Nitab4.5_0005085g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 7.2e-11 71.2 43 60.5
Nitab4.5_0001370g0070 Nicotiana tabacum HOM05D004040 ORTHO05D000309 9.4e-11 70.9 91 39.6
Nitab4.5_0005741g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 9.4e-11 70.9 89 41.6
CAN.G303.31 Capsicum annuum HOM05D000170 ORTHO05D000159 1.2e-10 70.5 111 40.5
Nitab4.5_0008054g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.6e-10 70.1 59 44.1
Nitab4.5_0005772g0100 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.1e-10 69.7 80 43.8
Nitab4.5_0015725g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.7e-10 69.3 62 48.4
Nitab4.5_0004970g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.6e-10 68.9 80 46.2
Nitab4.5_0008946g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.6e-10 68.9 80 43.8
Nitab4.5_0007976g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.0e-10 67.8 49 51.0
Nitab4.5_0010408g0040 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.0e-10 67.8 91 37.4
Nitab4.5_0000529g0090 Nicotiana tabacum HOM05D009794 ORTHO05D000309 1.8e-09 66.6 63 44.4
Nitab4.5_0008271g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.8e-09 66.6 80 42.5
Nitab4.5_0010257g0020 Nicotiana tabacum HOM05D009408 ORTHO05D000309 1.8e-09 66.6 124 36.3
Solyc12g150117.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 3.0e-09 65.9 56 50.0
Nitab4.5_0000337g0240 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.0e-09 65.5 46 54.3
DCAR_029331 Daucus carota HOM05D001383 ORTHO05D000309 5.2e-09 65.1 96 38.5
Hma1.2p1_0470F.1_g159220 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.2e-09 65.1 98 36.7
Nitab4.5_0002918g0110 Nicotiana tabacum HOM05D009794 ORTHO05D000309 6.7e-09 64.7 70 41.4
Nitab4.5_0009037g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 8.8e-09 64.3 78 44.9
Nitab4.5_0016516g0010 Nicotiana tabacum HOM05D009794 ORTHO05D000309 8.8e-09 64.3 67 43.3
DCAR_001866 Daucus carota HOM05D001383 ORTHO05D000309 1.2e-08 63.9 126 34.9
Nitab4.5_0000381g0280 Nicotiana tabacum HOM05D009794 ORTHO05D000309 1.2e-08 63.9 74 37.8
Nitab4.5_0001759g0090 Nicotiana tabacum HOM05D009794 ORTHO05D000309 1.2e-08 63.9 70 40.0
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.0e-08 63.2 111 34.2
Nitab4.5_0000128g0210 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.0e-08 63.2 63 42.9
Nitab4.5_0000682g0010 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.0e-08 63.2 70 40.0
Nitab4.5_0013705g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.6e-08 62.8 80 42.5
Nitab4.5_0022073g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.6e-08 62.8 78 44.9
Dinv24546 Davidia involucrata HOM05D001383 ORTHO05D000309 3.3e-08 62.4 46 52.2
Nitab4.5_0000141g0260 Nicotiana tabacum HOM05D009794 ORTHO05D000309 3.3e-08 62.4 63 41.3
Nitab4.5_0000299g0230 Nicotiana tabacum HOM05D009794 ORTHO05D000309 3.3e-08 62.4 46 52.2
Actinidia16536 Actinidia chinensis HOM05D001383 ORTHO05D000309 4.4e-08 62.0 48 52.1
Sopen00g004430 Solanum pennellii HOM05D000679 ORTHO05D000482 4.4e-08 62.0 53 50.9
DCAR_006044 Daucus carota HOM05D001383 ORTHO05D000309 5.7e-08 61.6 117 35.9
Nitab4.5_0010359g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.7e-08 61.6 102 39.2
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.5e-08 61.2 77 40.3
Nitab4.5_0000463g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.3e-07 60.5 75 44.0
Nitab4.5_0003726g0110 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.3e-07 60.5 44 59.1
Solyc05g017863.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 1.3e-07 60.5 90 40.0
PGSC0003DMG402006646 Solanum tuberosum HOM05D009408 ORTHO05D000309 1.3e-07 60.5 44 54.5
CAN.G767.55 Capsicum annuum HOM05D011038 ORTHO05D004172 1.7e-07 60.1 119 33.6
Hma1.2p1_2779F.1_g328290 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-07 60.1 44 52.3
Hma1.2p1_1041F.1_g251030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.2e-07 59.7 50 52.0
Lsat_1_v5_gn_4_63641 Lactuca sativa HOM05D010091 ORTHO05D012356 2.2e-07 59.7 67 40.3
SGA_v2.0_scaffold203G41556 Striga asiatica HOM05D011630 ORTHO05D014269 2.2e-07 59.7 117 32.5
Hma1.2p1_0211F.1_g089820 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.8e-07 59.3 76 38.2
Hma1.2p1_1407F.1_g281470 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.8e-07 59.3 76 39.5
Lsat_1_v5_gn_0_12581 Lactuca sativa HOM05D010091 ORTHO05D012356 2.8e-07 59.3 67 40.3
Lsat_1_v5_gn_3_18240 Lactuca sativa HOM05D010091 ORTHO05D012356 2.8e-07 59.3 67 40.3
Lsat_1_v5_gn_7_32160 Lactuca sativa HOM05D010091 ORTHO05D012356 2.8e-07 59.3 67 40.3
Lsat_1_v5_gn_7_32200 Lactuca sativa HOM05D010091 ORTHO05D012356 2.8e-07 59.3 67 40.3
Nitab4.5_0000073g0140 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.8e-07 59.3 74 36.5
Nitab4.5_0008808g0010 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.8e-07 59.3 75 44.0
Nitab4.5_0009435g0010 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.8e-07 59.3 37 59.5
Oeu043460.1 Olea europaea HOM05D001383 ORTHO05D000309 3.7e-07 58.9 85 38.8
Peaxi162Scf00756g00016 Petunia axillaris HOM05D001383 ORTHO05D000309 3.7e-07 58.9 52 46.2
SGA_v2.0_scaffold22G09678 Striga asiatica HOM05D011630 ORTHO05D014269 3.7e-07 58.9 123 30.1
BcaB06g26191 Brassica carinata HOM05D007774 ORTHO05D000309 4.8e-07 58.5 113 30.1
Dinv05615 Davidia involucrata HOM05D001383 ORTHO05D000309 4.8e-07 58.5 45 51.1
Nitab4.5_0000270g0070 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.8e-07 58.5 70 37.1
Nitab4.5_0002330g0150 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.8e-07 58.5 46 50.0
Nitab4.5_0002980g0110 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.8e-07 58.5 60 43.3
Nitab4.5_0004685g0020 Nicotiana tabacum HOM05D009794 ORTHO05D000309 4.8e-07 58.5 63 41.3
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 6.3e-07 58.2 62 38.7
CAN.G1005.18 Capsicum annuum HOM05D011038 ORTHO05D004172 6.3e-07 58.2 90 36.7
DCAR_029935 Daucus carota HOM05D001383 ORTHO05D000309 6.3e-07 58.2 94 37.2
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 6.3e-07 58.2 97 35.1
Nitab4.5_0000923g0160 Nicotiana tabacum HOM05D004040 ORTHO05D000309 6.3e-07 58.2 89 40.4
SGA_v2.0_scaffold217G42455 Striga asiatica HOM05D011630 ORTHO05D014269 6.3e-07 58.2 136 34.6
SGA_v2.0_scaffold263G45986 Striga asiatica HOM05D011630 ORTHO05D014269 6.3e-07 58.2 136 34.6
Hma1.2p1_1382F.1_g279350 Hydrangea macrophylla HOM05D008126 ORTHO05D000309 8.2e-07 57.8 83 33.7
CAN.G806.9 Capsicum annuum HOM05D011038 ORTHO05D004172 1.1e-06 57.4 98 35.7
Nitab4.5_0003883g0040 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.1e-06 57.4 45 53.3
Oeu031331.1 Olea europaea HOM05D001383 ORTHO05D000309 1.1e-06 57.4 85 37.6
Peaxi162Scf00225g00101 Petunia axillaris HOM05D001383 ORTHO05D000309 1.1e-06 57.4 50 42.0
SGA_v2.0_scaffold354G49733 Striga asiatica HOM05D011630 ORTHO05D014269 1.1e-06 57.4 139 33.1
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.4e-06 57.0 98 34.7
Nitab4.5_0006039g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.4e-06 57.0 42 59.5
SGA_v2.0_scaffold2G00884 Striga asiatica HOM05D011630 ORTHO05D014269 1.4e-06 57.0 136 33.8
SGA_v2.0_scaffold53G19282 Striga asiatica HOM05D011630 ORTHO05D014269 1.4e-06 57.0 136 33.8
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.8e-06 56.6 42 52.4
CAN.G1288.6 Capsicum annuum HOM05D004040 ORTHO05D000309 1.8e-06 56.6 85 41.2
Eucgr.H02341 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.8e-06 56.6 107 29.9
Eucgr.L01799 Eucalyptus grandis HOM05D001383 ORTHO05D000309 1.8e-06 56.6 80 32.5
Hma1.2p1_0787F.1_g217983 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-06 56.6 44 47.7
Nitab4.5_0000147g0040 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.8e-06 56.6 80 35.0
Nitab4.5_0005808g0100 Nicotiana tabacum HOM05D004040 ORTHO05D000309 1.8e-06 56.6 91 36.3
Peaxi162Scf00171g00022 Petunia axillaris HOM05D001383 ORTHO05D000309 1.8e-06 56.6 45 46.7
Peaxi162Scf00699g00025 Petunia axillaris HOM05D001383 ORTHO05D000309 1.8e-06 56.6 45 46.7
Peaxi162Scf00990g00010 Petunia axillaris HOM05D001383 ORTHO05D000309 1.8e-06 56.6 45 46.7
Rhsim01G0020400 Rhododendron simsii HOM05D001383 ORTHO05D000309 1.8e-06 56.6 95 34.7
Atru.chr1.3458 Acer truncatum HOM05D001383 ORTHO05D000309 2.4e-06 56.2 74 40.5
Hma1.2p1_0071F.1_g038200 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.4e-06 56.2 78 35.9
Lsat_1_v5_gn_2_74380 Lactuca sativa HOM05D010091 ORTHO05D012356 2.4e-06 56.2 67 38.8
Nitab4.5_0011105g0020 Nicotiana tabacum HOM05D009794 ORTHO05D000309 2.4e-06 56.2 46 47.8
Peaxi162Scf00723g00110 Petunia axillaris HOM05D001383 ORTHO05D000309 2.4e-06 56.2 52 44.2
Peaxi162Scf00795g00012 Petunia axillaris HOM05D001383 ORTHO05D000309 2.4e-06 56.2 45 46.7
Prupe.7G055500 Prunus persica HOM05D001383 ORTHO05D000309 2.4e-06 56.2 81 35.8
VMungo0331G0323 Vigna mungo HOM05D008573 ORTHO05D009911 2.4e-06 56.2 90 37.8
CAN.G162.74 Capsicum annuum HOM05D004040 ORTHO05D000309 3.1e-06 55.8 86 40.7
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.1e-06 55.8 115 34.8
Hma1.2p1_1051F.1_g252070 Hydrangea macrophylla HOM05D008126 ORTHO05D000309 3.1e-06 55.8 43 48.8
Lsat_1_v5_gn_1_98500 Lactuca sativa HOM05D010091 ORTHO05D012356 3.1e-06 55.8 45 48.9
Lsat_1_v5_gn_3_56760 Lactuca sativa HOM05D010091 ORTHO05D000529 3.1e-06 55.8 45 48.9
Nitab4.5_0001203g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.1e-06 55.8 117 29.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 4.1e-06 55.5 48 47.9
DCAR_028160 Daucus carota HOM05D001383 ORTHO05D000309 4.1e-06 55.5 138 29.7
Lsat_1_v5_gn_9_80080 Lactuca sativa HOM05D010091 ORTHO05D012356 4.1e-06 55.5 45 48.9
Nitab4.5_0006105g0050 Nicotiana tabacum HOM05D004040 ORTHO05D000309 4.1e-06 55.5 73 41.1
SGA_v2.0_scaffold3G01575 Striga asiatica HOM05D011630 ORTHO05D014269 4.1e-06 55.5 77 33.8
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 5.3e-06 55.1 51 45.1
Nitab4.5_0000082g0450 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.3e-06 55.1 108 34.3
SGA_v2.0_scaffold3G01609 Striga asiatica HOM05D001383 ORTHO05D000309 5.3e-06 55.1 87 35.6
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 7.0e-06 54.7 56 46.4
Hma1.2p1_1219F.1_g267960 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.0e-06 54.7 77 37.7
Oeu043155.1 Olea europaea HOM05D001383 ORTHO05D000309 7.0e-06 54.7 85 36.5
Peaxi162Scf00658g00010 Petunia axillaris HOM05D001383 ORTHO05D000309 7.0e-06 54.7 52 44.2
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 7.0e-06 54.7 67 41.8
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 9.1e-06 54.3 42 50.0
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 9.1e-06 54.3 42 50.0
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 9.1e-06 54.3 48 45.8
DCAR_001034 Daucus carota HOM05D001383 ORTHO05D000309 9.1e-06 54.3 147 30.6
DCAR_026361 Daucus carota HOM05D001383 ORTHO05D000309 9.1e-06 54.3 94 38.3
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 9.1e-06 54.3 42 50.0
Peaxi162Scf00562g00008 Petunia axillaris HOM05D004040 ORTHO05D000309 9.1e-06 54.3 45 44.4
Peaxi162Scf00914g00516 Petunia axillaris HOM05D004040 ORTHO05D000309 9.1e-06 54.3 82 36.6
Peaxi162Scf01167g00009 Petunia axillaris HOM05D004040 ORTHO05D000309 9.1e-06 54.3 45 44.4
SalBow3G1493 Salvia bowleyana HOM05D017994 ORTHO05D353621 9.1e-06 54.3 122 31.1
SGA_v2.0_scaffold174G39284 Striga asiatica HOM05D001383 ORTHO05D000309 9.1e-06 54.3 78 37.2
SGA_v2.0_scaffold38G14998 Striga asiatica HOM05D011630 ORTHO05D014269 9.1e-06 54.3 80 36.2
SGA_v2.0_scaffold621G53225 Striga asiatica HOM05D011630 ORTHO05D014269 9.1e-06 54.3 123 28.5


User provided reference genes

Program Settings