Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g042960.3 Solanum lycopersicum HOM05D004028 ORTHO05D004844 2.7e-299 1031.2 508 100.0
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 5.2e-165 585.1 508 64.2
Peaxi162Scf00034g00112 Petunia axillaris HOM05D004028 ORTHO05D004844 3.0e-157 559.3 600 54.0
Sopen12g022140 Solanum pennellii HOM05D004028 ORTHO05D004844 6.8e-141 505.0 498 58.8
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 1.4e-114 417.5 605 41.0
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 2.6e-108 396.7 605 38.8
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 2.1e-102 377.1 607 39.4
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 5.3e-85 319.3 606 34.7
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 1.1e-69 268.5 616 32.1
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 1.9e-66 257.7 608 31.6
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 3.6e-65 253.4 609 30.5
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 6.7e-64 249.2 610 30.3
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 8.8e-64 248.8 599 29.9
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 2.6e-63 247.3 608 30.1
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 5.7e-63 246.1 604 28.8
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 9.7e-63 245.4 610 30.0
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 1.7e-62 244.6 606 28.9
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 3.7e-62 243.4 604 29.5
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 3.7e-62 243.4 604 28.5
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 1.1e-61 241.9 604 30.1
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 1.1e-61 241.9 612 29.4
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.4e-61 241.5 608 30.1
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 1.8e-61 241.1 605 29.8
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 2.4e-61 240.7 604 28.6
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 9.1e-61 238.8 612 30.1
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 1.5e-60 238.0 610 28.7
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 3.5e-60 236.9 608 29.8
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 4.5e-60 236.5 598 28.4
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 7.7e-60 235.7 602 29.2
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 7.7e-60 235.7 608 29.6
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 1.0e-59 235.3 601 29.5
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 1.3e-59 235.0 607 28.2
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 3.8e-59 233.4 599 29.0
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 3.8e-59 233.4 599 29.0
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 3.8e-59 233.4 601 29.6
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.8e-59 233.4 611 29.0
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 5.0e-59 233.0 611 29.0
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 1.5e-58 231.5 592 29.2
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 1.9e-58 231.1 608 28.9
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 2.5e-58 230.7 610 29.3
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.2e-58 230.3 607 28.8
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 4.2e-58 229.9 602 28.6
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 9.4e-58 228.8 608 29.6
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 3.6e-57 226.9 601 28.8
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 6.1e-57 226.1 605 29.1
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 1.4e-56 224.9 606 28.5
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 1.8e-56 224.6 610 29.3
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 2.3e-56 224.2 610 29.0
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 2.3e-56 224.2 610 29.2
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 4.0e-56 223.4 609 28.6
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 5.2e-56 223.0 609 27.6
BraA06t23378Z Brassica rapa HOM05D004028 ORTHO05D004844 6.7e-56 222.6 603 27.9
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 6.7e-56 222.6 601 29.0
A06p01590 Brassica napus HOM05D004028 ORTHO05D004844 8.8e-56 222.2 603 28.0
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 1.1e-55 221.9 608 28.6
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 2.0e-55 221.1 608 27.8
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 1.3e-54 218.4 608 28.6
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 1.7e-54 218.0 614 29.0
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.7e-54 218.0 577 30.5
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.7e-54 218.0 609 28.7
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 2.8e-54 217.2 607 28.8
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 4.8e-54 216.5 608 27.6
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 4.8e-54 216.5 603 27.9
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 8.2e-54 215.7 608 28.6
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 1.4e-53 214.9 600 27.8
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 1.8e-53 214.5 602 28.4
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 3.1e-53 213.8 609 28.1
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 5.3e-53 213.0 602 27.9
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 9.1e-53 212.2 606 28.4
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 7.7e-52 209.1 608 28.6
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 1.3e-51 208.4 610 27.9
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 1.3e-51 208.4 592 28.2
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 1.7e-51 208.0 592 29.2
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 2.9e-51 207.2 596 26.3
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 5.0e-51 206.5 601 28.1
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 5.0e-51 206.5 600 29.2
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 8.5e-51 205.7 605 26.8
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 1.5e-50 204.9 610 28.0
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 1.5e-50 204.9 606 27.7
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.9e-50 204.5 569 29.9
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 1.9e-50 204.5 600 27.0
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 2.5e-50 204.1 600 26.8
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 2.5e-50 204.1 612 28.8
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 1.2e-49 201.8 611 27.7
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 1.6e-49 201.4 606 27.4
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 3.6e-49 200.3 599 27.9
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 4.7e-49 199.9 611 26.5
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 6.1e-49 199.5 582 27.1
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 8.0e-49 199.1 605 27.4
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 3.0e-48 197.2 581 27.5
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 4.0e-48 196.8 619 27.0
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 8.8e-48 195.7 583 28.0
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 4.4e-47 193.4 608 27.5
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 5.7e-47 193.0 609 26.3
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.3e-46 191.8 616 26.3
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 1.7e-46 191.4 612 25.7
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 2.2e-46 191.0 600 27.0
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 3.7e-46 190.3 586 28.7
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 3.7e-46 190.3 586 28.7
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 4.8e-46 189.9 559 27.5
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 3.1e-45 187.2 608 26.6
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 3.1e-45 187.2 628 25.5
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 1.7e-43 181.4 609 26.9
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 8.5e-43 179.1 584 27.1
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 1.5e-42 178.3 609 25.9
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 5.5e-42 176.4 580 27.2
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 7.2e-42 176.0 612 25.3
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 9.4e-42 175.6 583 27.6
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 1.2e-41 175.3 404 30.9
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.6e-41 173.7 610 25.6
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 8.0e-41 172.6 586 27.0
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 1.0e-40 172.2 593 26.5
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 1.4e-40 171.8 425 30.1
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.8e-40 171.4 603 25.9
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 8.8e-40 169.1 517 29.2
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 2.6e-39 167.5 582 27.5
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 2.6e-39 167.5 408 29.7
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 4.4e-39 166.8 569 26.5
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 9.8e-39 165.6 600 26.2
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.7e-38 164.9 580 27.2
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.8e-37 161.4 572 26.7
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.2e-36 158.7 599 25.7
CDE02G1484 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 2.7e-36 157.5 288 36.5
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.7e-36 157.5 594 25.4
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.0e-35 155.6 561 27.8
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.7e-35 154.8 297 35.4
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 7.2e-34 149.4 289 34.6
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.1e-33 147.9 602 25.1
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.3e-32 144.4 600 26.8
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 2.0e-31 141.4 562 26.2
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 7.5e-31 139.4 565 26.0
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 6.4e-30 136.3 488 25.6
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 3.2e-29 134.0 275 36.0
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 5.4e-29 133.3 606 23.4
Os07g0580766 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.3e-27 128.6 314 30.6
Cc09_g08320 Coffea canephora HOM05D004028 ORTHO05D004844 1.5e-26 125.2 607 24.4
Mapoly0121s0043 Marchantia polymorpha HOM05D004028 ORTHO05D004844 2.8e-25 120.9 568 24.1
Duzib168G0223 Durio zibethinus HOM05D004028 ORTHO05D004844 4.0e-24 117.1 527 24.5
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.3e-22 112.1 293 31.1
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.1e-18 99.0 257 29.2
AUR62031946 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.9e-18 98.2 385 26.8
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 9.5e-18 95.9 303 26.1
CSS0013629 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 1.2e-17 95.5 370 25.7
Dinv38073 Davidia involucrata HOM05D004028 ORTHO05D004844 1.8e-16 91.7 246 24.4
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 3.1e-16 90.9 389 23.4
COL.COLO4_34970 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.6e-15 87.8 403 23.6
Lsat_1_v5_gn_1_33920 Lactuca sativa HOM05D004028 ORTHO05D004844 1.4e-13 82.0 110 35.5
TAR636G1811 Trochodendron aralioides HOM05D004028 ORTHO05D004844 4.6e-12 77.0 91 39.6
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 8.6e-11 72.8 103 35.0
Lj8P335T19 Lonicera japonica HOM05D004028 ORTHO05D048445 3.3e-10 70.9 97 41.2
SMO180G0024 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 5.6e-10 70.1 104 34.6
SMO340G0015 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 9.5e-10 69.3 104 34.6
Mapoly0017s0022 Marchantia polymorpha HOM05D004028 ORTHO05D004844 3.6e-09 67.4 154 33.1
Sabra06G0142000 Salix brachista HOM05D004028 ORTHO05D004844 3.6e-09 67.4 94 34.0
Rhsim04G0020600 Rhododendron simsii HOM05D000397 ORTHO05D002023 8.1e-09 66.2 462 22.3
SalBow2G1894 Salvia bowleyana HOM05D004028 ORTHO05D004844 4.0e-08 63.9 66 43.9
AUR62031947 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.2e-07 62.4 113 32.7
MD09G1217100 Malus domestica HOM05D004028 ORTHO05D004844 1.3e-06 58.9 121 29.8
Thecc.09G118100 Theobroma cacao HOM05D004028 ORTHO05D004844 2.9e-06 57.8 238 27.3
Os01g0678000 Oryza sativa ssp. japonica HOM05D000397 ORTHO05D002023 4.9e-06 57.0 98 34.7
Ca_00335_v3 Cicer arietinum L. HOM05D000397 ORTHO05D002023 6.4e-06 56.6 139 28.8


User provided reference genes

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