Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 7.0e-57 224.9 262 100.0
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 7.7e-56 221.5 262 95.0
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 2.1e-45 186.8 262 90.5
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 3.6e-45 186.0 262 89.3
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 89.7
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 90.1
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 3.1e-44 183.0 262 89.3
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 5.2e-44 182.2 262 88.5
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 3.4e-43 179.5 262 80.2
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 4.4e-43 179.1 262 87.8
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 9.8e-43 177.9 262 82.8
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 9.8e-43 177.9 262 82.8
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 1.3e-42 177.6 262 88.5
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.7e-42 177.2 260 87.3
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.7e-42 177.2 260 81.5
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.7e-42 177.2 262 87.4
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.7e-42 177.2 262 87.4
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.7e-42 177.2 262 87.4
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 1.7e-42 177.2 262 87.8
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 2.9e-42 176.4 262 82.1
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 2.9e-42 176.4 262 85.5
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 2.9e-42 176.4 262 80.5
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 4.9e-42 175.6 261 87.7
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 4.9e-42 175.6 262 88.5
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 8.3e-42 174.9 262 89.7
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 1.1e-41 174.5 262 87.4
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 1.1e-41 174.5 262 87.4
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 1.1e-41 174.5 262 87.4
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.1e-41 174.5 262 80.2
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 1.1e-41 174.5 261 87.4
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.4e-41 174.1 262 88.2
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.9e-41 173.7 262 81.3
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 1.9e-41 173.7 262 86.3
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 2.4e-41 173.3 262 89.7
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 4.1e-41 172.6 262 86.6
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 4.1e-41 172.6 260 86.5
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 4.1e-41 172.6 260 88.1
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 5.4e-41 172.2 260 87.3
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.4e-41 172.2 262 89.3
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 7.0e-41 171.8 260 87.3
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 7.0e-41 171.8 260 86.9
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 2.0e-40 170.2 263 87.1
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 3.5e-40 169.5 262 85.1
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 4.6e-40 169.1 262 87.0
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 4.6e-40 169.1 262 87.0
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 7.8e-40 168.3 263 87.5
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 1.0e-39 167.9 262 85.1
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 1.3e-39 167.5 262 86.6
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.3e-39 166.8 299 55.5
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.5e-38 164.1 261 84.3
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 1.5e-38 164.1 262 86.6
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.5e-38 164.1 261 83.9
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 4.3e-38 162.5 262 84.4
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.3e-38 162.5 262 85.9
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.6e-38 162.2 262 85.9
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 7.3e-38 161.8 262 85.1
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 6.2e-37 158.7 262 84.7
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 8.0e-37 158.3 262 85.1
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 1.1e-36 157.9 260 83.8
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.4e-36 157.5 260 83.8
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 83.9
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 5.2e-36 155.6 262 38.5
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 1.2e-35 154.5 261 83.9
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 2.6e-35 153.3 258 84.1
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 3.4e-35 152.9 261 83.1
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 3.4e-35 152.9 262 82.1
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 3.4e-35 152.9 287 80.5
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 4.4e-35 152.5 261 83.1
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 5.8e-35 152.1 262 82.1
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 5.8e-35 152.1 262 82.1
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 5.8e-35 152.1 262 82.1
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 5.8e-35 152.1 262 78.6
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 7.5e-35 151.8 265 84.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 1.3e-34 151.0 261 83.1
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.9e-34 149.8 262 62.6
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 83.1
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 83.1
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 8.3e-34 148.3 261 82.8
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 1.1e-33 147.9 261 83.1
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 1.4e-33 147.5 261 82.8
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.4e-33 147.5 261 82.8
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 2.4e-33 146.7 261 82.8
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 3.2e-33 146.4 284 65.1
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 3.2e-33 146.4 261 82.4
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 3.2e-33 146.4 269 84.0
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 7.1e-33 145.2 261 82.4
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 7.1e-33 145.2 261 82.4
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 9.2e-33 144.8 261 82.0
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 9.2e-33 144.8 261 82.0
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 7.8e-32 141.7 262 82.8
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 1.7e-31 140.6 262 82.4
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 8.6e-31 138.3 262 80.5
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 8.1e-29 131.7 269 58.7
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 1.1e-28 131.3 261 80.5
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 5.2e-28 129.0 231 90.0
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.6e-27 126.7 251 81.7
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 4.4e-27 125.9 253 82.6
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 1.3e-26 124.4 337 65.9
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.3e-26 124.4 64 95.3
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 1.7e-26 124.0 234 86.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 4.9e-26 122.5 76 76.3
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.4e-25 120.2 73 80.8
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 3.2e-25 119.8 76 78.9
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 5.4e-25 119.0 75 77.3
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 9.2e-25 118.2 236 85.6
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 7.8e-24 115.2 86 67.4
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.0e-23 114.8 63 87.3
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 1.0e-23 114.8 262 76.7
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 3.0e-23 113.2 268 72.8
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 1.1e-22 111.3 97 60.8
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 5.6e-22 109.0 260 71.9
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 1.2e-21 107.8 64 78.1
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 1.6e-21 107.5 63 79.4
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 2.8e-21 106.7 63 81.0
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 3.6e-21 106.3 62 77.4
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 4.7e-21 105.9 63 77.8
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 4.7e-21 105.9 133 48.9
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 5.8e-19 99.0 75 60.0
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 3.8e-18 96.3 76 61.8
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 6.4e-18 95.5 63 69.8
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 7.8e-16 88.6 207 89.4
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.7e-15 87.4 52 78.8
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 1.7e-15 87.4 73 68.5
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.1e-14 84.7 66 59.1
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 4.3e-14 82.8 153 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 1.3e-13 81.3 61 55.7
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.4e-12 77.8 75 57.3
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 6.9e-12 75.5 260 70.0
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 1.7e-10 70.9 61 52.5
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 4.2e-09 66.2 60 45.0
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.2e-08 64.7 60 46.7
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 1.6e-08 64.3 61 49.2
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 3.5e-08 63.2 61 47.5
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 4.6e-08 62.8 61 42.6
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 61 47.5
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 6.0e-08 62.4 61 47.5
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 61 47.5
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 7.8e-08 62.0 270 39.3
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.3e-07 61.2 61 44.3
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.7e-07 60.8 61 49.2
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 2.3e-07 60.5 61 45.9
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 5.1e-07 59.3 57 45.6
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 5.1e-07 59.3 60 41.7
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 5.1e-07 59.3 76 40.8
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 6.6e-07 58.9 70 47.1
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 8.7e-07 58.5 76 40.8
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 8.7e-07 58.5 76 40.8
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 44.3
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 1.5e-06 57.8 60 40.0
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 42.6
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 44.3
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 1.9e-06 57.4 74 40.5
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 1.9e-06 57.4 70 38.6
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 1.9e-06 57.4 70 38.6
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 2.5e-06 57.0 68 41.2
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 2.5e-06 57.0 55 45.5
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 2.5e-06 57.0 62 43.5
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 3.3e-06 56.6 60 41.7
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 4.3e-06 56.2 62 43.5
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 4.3e-06 56.2 60 41.7
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 64 42.2
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 41.0
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 5.6e-06 55.8 31 83.9
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 7.3e-06 55.5 68 39.7
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 7.3e-06 55.5 60 41.7
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 9.6e-06 55.1 68 38.2
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 9.6e-06 55.1 60 41.7


User provided reference genes

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