Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.6e-152 542.7 272 100.0
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 3.4e-46 189.5 102 81.4
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.3e-45 187.6 103 81.6
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 6.4e-45 185.3 116 69.8
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 1.4e-44 184.1 102 81.4
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 2.3e-42 176.8 116 70.7
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 8.6e-42 174.9 110 72.7
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 4.3e-41 172.6 102 75.5
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 4.3e-41 172.6 116 67.2
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 5.2e-39 165.6 102 74.5
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 6.8e-39 165.2 117 61.5
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 4.4e-38 162.5 117 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 2.2e-37 160.2 116 61.2
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 1.4e-36 157.5 118 59.3
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 1.4e-36 157.5 118 59.3
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 2.5e-33 146.7 116 60.3
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 4.0e-31 139.4 116 58.6
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 2.0e-30 137.1 64 98.4
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 2.2e-29 133.7 72 80.6
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 2.2e-29 133.7 61 100.0
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 7.8e-27 125.2 74 77.0
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 1.3e-26 124.4 75 76.0
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 3.0e-26 123.2 108 55.6
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 1.1e-25 121.3 59 89.8
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 1.3e-24 117.9 59 88.1
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 2.4e-23 113.6 144 40.3
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 3.1e-23 113.2 97 55.7
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 4.0e-23 112.8 144 41.0
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 9.0e-23 111.7 143 41.3
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 9.0e-23 111.7 144 39.6
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 1.5e-22 110.9 144 38.2
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 1.5e-22 110.9 144 43.1
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 1.5e-22 110.9 144 41.7
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 1.5e-22 110.9 144 41.7
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 2.6e-22 110.2 144 41.0
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 2.6e-22 110.2 144 41.7
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 2.6e-22 110.2 147 40.1
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 4.5e-22 109.4 144 39.6
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 4.5e-22 109.4 144 39.6
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 4.5e-22 109.4 144 38.2
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 5.8e-22 109.0 144 40.3
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 5.8e-22 109.0 144 38.9
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 5.8e-22 109.0 147 39.5
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 5.8e-22 109.0 144 41.0
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 5.8e-22 109.0 144 41.0
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 5.8e-22 109.0 144 37.5
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 1.3e-21 107.8 144 37.5
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 1.3e-21 107.8 144 41.7
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 1.3e-21 107.8 144 36.8
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 1.7e-21 107.5 144 41.7
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 1.7e-21 107.5 144 38.9
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 2.2e-21 107.1 144 41.0
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 2.2e-21 107.1 144 38.2
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 2.2e-21 107.1 144 39.6
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 2.9e-21 106.7 144 38.2
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 2.9e-21 106.7 144 38.2
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 2.9e-21 106.7 144 36.8
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 3.8e-21 106.3 144 38.2
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 4.9e-21 105.9 144 41.0
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.4e-21 105.5 144 37.5
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 8.4e-21 105.1 144 38.2
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 8.4e-21 105.1 144 37.5
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.1e-20 104.8 144 37.5
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 1.4e-20 104.4 62 66.1
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 1.9e-20 104.0 144 37.5
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 2.4e-20 103.6 144 38.9
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 3.2e-20 103.2 144 36.8
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 4.2e-20 102.8 144 36.8
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 4.2e-20 102.8 144 36.8
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 4.2e-20 102.8 144 38.2
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 4.2e-20 102.8 144 38.2
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 5.4e-20 102.4 144 36.1
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 7.1e-20 102.1 144 38.2
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 9.3e-20 101.7 58 70.7
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 4.6e-19 99.4 138 39.9
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 4.6e-19 99.4 144 36.1
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 6.0e-19 99.0 125 39.2
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 1.0e-18 98.2 144 36.8
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.0e-18 98.2 55 74.5
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 1.3e-18 97.8 54 70.4
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 2.3e-18 97.1 144 34.0
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 5.1e-18 95.9 57 64.9
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 6.7e-18 95.5 159 34.6
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.9e-17 94.0 55 67.3
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 2.5e-17 93.6 55 67.3
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 4.3e-17 92.8 138 35.5
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 7.4e-17 92.0 147 34.7
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 9.6e-17 91.7 56 64.3
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 2.1e-16 90.5 48 75.0
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 2.8e-16 90.1 57 64.9
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 4.8e-16 89.4 56 66.1
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 6.2e-16 89.0 56 66.1
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 6.2e-16 89.0 56 66.1
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 1.1e-15 88.2 147 34.0
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 3.4e-14 83.2 56 57.1
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 2.4e-12 77.0 43 72.1
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 9.3e-12 75.1 47 63.8
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 7.9e-11 72.0 53 54.7
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 2.3e-10 70.5 50 64.0
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 3.9e-10 69.7 36 77.8
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 3.3e-09 66.6 53 54.7


User provided reference genes

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