Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 1.8e-81 305.8 149 100.0
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 7.3e-27 124.4 69 88.4
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 7.3e-27 124.4 69 88.4
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 7.3e-27 124.4 69 88.4
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 7.3e-27 124.4 69 88.4
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-26 123.2 69 88.4
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 3.6e-26 122.1 69 87.0
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 8.1e-26 120.9 68 86.8
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 8.1e-26 120.9 71 83.1
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 1.4e-25 120.2 69 85.5
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 1.8e-25 119.8 69 85.5
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 2.4e-25 119.4 69 84.1
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 3.1e-25 119.0 71 84.5
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 6.9e-25 117.9 69 84.1
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 6.9e-25 117.9 67 85.1
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.9e-25 117.9 69 84.1
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.9e-25 117.9 69 84.1
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 84.1
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 5.8e-24 114.8 71 80.3
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 5.8e-24 114.8 69 82.6
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 7.6e-24 114.4 69 81.2
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 1.7e-23 113.2 69 81.2
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 82.6
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 81.2
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 81.2
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 81.2
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 81.2
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 81.2
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 81.2
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 79.7
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-23 112.8 69 79.7
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 2.9e-23 112.5 69 81.2
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 2.9e-23 112.5 69 82.6
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 2.9e-23 112.5 69 82.6
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 3.8e-23 112.1 69 78.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.8e-23 112.1 69 81.2
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 4.9e-23 111.7 69 81.2
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 4.9e-23 111.7 69 79.7
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 4.9e-23 111.7 69 79.7
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 4.9e-23 111.7 67 83.6
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 8.4e-23 110.9 69 79.7
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 8.4e-23 110.9 69 79.7
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 1.1e-22 110.5 69 79.7
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 1.4e-22 110.2 69 79.7
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 1.4e-22 110.2 69 79.7
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 1.9e-22 109.8 69 78.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.2e-22 108.6 69 82.6
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 5.4e-22 108.2 69 78.3
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 5.4e-22 108.2 69 79.7
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 5.4e-22 108.2 69 76.8
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 3.5e-21 105.5 69 76.8
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 4.6e-21 105.1 69 78.3
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 2.3e-20 102.8 69 75.4
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.1e-20 101.7 85 63.5
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 6.6e-20 101.3 67 74.6
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 1.1e-19 100.5 69 73.9
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 1.9e-19 99.8 69 75.4
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.3e-19 99.0 79 68.4
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 4.8e-18 95.1 69 72.5
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 1.1e-17 94.0 54 85.2
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 5.3e-17 91.7 63 73.0
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 1.7e-15 86.7 53 84.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.7e-15 86.7 50 82.0
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 8.4e-15 84.3 57 75.4
Solyc00g500102.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 1.1e-14 84.0 62 69.4
Solyc00g500119.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 1.1e-14 84.0 62 69.4
Solyc00g500276.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 1.1e-14 84.0 62 69.4
Solyc00g500360.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 1.1e-14 84.0 62 69.4
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.1e-14 84.0 62 69.4
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 4.2e-14 82.0 49 85.7
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 1.3e-12 77.0 53 75.5
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 2.5e-11 72.8 60 61.7
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 5.6e-11 71.6 73 47.9
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 7.6e-08 61.2 45 71.1
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 1.9e-06 56.6 42 71.4


User provided reference genes

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