Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g027850.3 Solanum lycopersicum HOM05D000084 ORTHO05D024740 2.3e-41 171.8 86 100.0
Sopen12g013310 Solanum pennellii HOM05D000084 ORTHO05D000639 8.8e-41 169.9 86 98.8
Peaxi162Scf00699g00417 Petunia axillaris HOM05D000084 ORTHO05D024740 6.5e-36 153.7 86 89.5
CAN.G34.14 Capsicum annuum HOM05D000084 ORTHO05D024740 2.0e-32 142.1 86 87.2
Nitab4.5_0000420g0140 Nicotiana tabacum HOM05D000084 ORTHO05D000639 2.0e-32 142.1 89 83.1
Nitab4.5_0003946g0010 Nicotiana tabacum HOM05D000084 ORTHO05D000639 3.1e-30 134.8 89 82.0
GSVIVG01022366001 Vitis vinifera HOM05D000084 ORTHO05D000639 3.5e-29 131.3 86 77.9
Actinidia16519 Actinidia chinensis HOM05D000084 ORTHO05D000639 5.9e-29 130.6 87 80.5
Dinv08214 Davidia involucrata HOM05D000084 ORTHO05D000639 7.7e-29 130.2 87 78.2
Dinv30328 Davidia involucrata HOM05D000084 ORTHO05D000639 7.7e-29 130.2 87 78.2
CSS0004491 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D024740 8.0e-26 120.2 84 76.2
Cc07_g19430 Coffea canephora HOM05D000084 ORTHO05D000639 1.4e-25 119.4 87 77.0
EL10Ac4g09669 Beta vulgaris HOM05D000084 ORTHO05D000639 6.7e-25 117.1 87 70.1
Hund21793 Selenicereus undatus HOM05D000084 ORTHO05D000639 6.7e-25 117.1 86 70.9
Rhsim08G0001400 Rhododendron simsii HOM05D000084 ORTHO05D000639 2.0e-24 115.5 87 72.4
SGA_v2.0_scaffold211G42170 Striga asiatica HOM05D000084 ORTHO05D000639 2.6e-24 115.2 87 74.7
TWI60G1144 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 3.3e-24 114.8 86 67.4
MD15G1137900 Malus domestica HOM05D000084 ORTHO05D000639 4.4e-24 114.4 86 73.3
MSTRG.23481 Avicennia marina HOM05D000084 ORTHO05D000639 5.7e-24 114.0 85 72.9
DCAR_022245 Daucus carota HOM05D000084 ORTHO05D000639 5.7e-24 114.0 84 70.2
Sed0023536 Sechium edule HOM05D000084 ORTHO05D000639 7.5e-24 113.6 84 70.2
TWI60G0915 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 9.7e-24 113.2 86 67.4
Prupe.4G280700 Prunus persica HOM05D000084 ORTHO05D000639 1.3e-23 112.8 86 72.1
ECA233G5645 Erigeron canadensis HOM05D000084 ORTHO05D000639 4.8e-23 110.9 88 70.5
Ciclev10019965m.g Citrus clementina HOM05D000084 ORTHO05D000639 6.3e-23 110.5 87 66.7
MD00G1110700 Malus domestica HOM05D000084 ORTHO05D000639 1.4e-22 109.4 86 69.8
Atru.chr9.1943 Acer truncatum HOM05D000084 ORTHO05D000639 1.8e-22 109.0 89 66.3
CiPaw.04G077500 Carya illinoinensis HOM05D000084 ORTHO05D000639 1.8e-22 109.0 86 68.6
AUR62000549 Chenopodium quinoa HOM05D000084 ORTHO05D000639 1.8e-22 109.0 87 67.8
Oeu038346.1 Olea europaea HOM05D000084 ORTHO05D000639 2.4e-22 108.6 87 70.1
RcHm_v2.0_Chr2g0123381 Rosa chinensis HOM05D000084 ORTHO05D000639 3.1e-22 108.2 87 69.0
Sed0026349 Sechium edule HOM05D000084 ORTHO05D000639 5.3e-22 107.5 85 70.6
Migut.H00834 Erythranthe guttata HOM05D000084 ORTHO05D000639 9.1e-22 106.7 88 68.2
Haze_25348 Corylus avellana HOM05D000084 ORTHO05D000639 1.6e-21 105.9 89 66.3
FvH4_1g25340 Fragaria vesca HOM05D000084 ORTHO05D000639 2.7e-21 105.1 87 70.1
FAN23G1911 Fragaria x ananassa HOM05D000084 ORTHO05D000639 2.7e-21 105.1 87 70.1
FAN26G0094 Fragaria x ananassa HOM05D000084 ORTHO05D000639 2.7e-21 105.1 87 70.1
FAN28G2683 Fragaria x ananassa HOM05D000084 ORTHO05D000639 2.7e-21 105.1 87 70.1
MELO3C009014.2 Cucumis melo HOM05D000084 ORTHO05D000639 1.0e-20 103.2 85 70.6
FAN19G1604 Fragaria x ananassa HOM05D000084 ORTHO05D000639 2.2e-20 102.1 87 69.0
CsaV3_4G031270 Cucumis sativus L. HOM05D000084 ORTHO05D000639 5.0e-20 100.9 85 69.4
Eucgr.H05079 Eucalyptus grandis HOM05D000084 ORTHO05D000639 8.5e-20 100.1 86 64.0
TAR376G0720 Trochodendron aralioides HOM05D000084 ORTHO05D000639 8.5e-20 100.1 83 67.5
Duzib205G1637 Durio zibethinus HOM05D000084 ORTHO05D000639 3.2e-19 98.2 87 65.5
Gohir.D09G184000 Gossypium hirsutum HOM05D000084 ORTHO05D000639 4.2e-19 97.8 85 65.9
PGR102G2481 Punica granatum HOM05D000084 ORTHO05D000639 4.2e-19 97.8 82 65.9
Gorai.006G206400 Gossypium raimondii HOM05D000084 ORTHO05D000639 5.5e-19 97.4 85 65.9
Gohir.A09G189200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 9.4e-19 96.7 85 65.9
Lj1g0010965 Lotus japonicus HOM05D000084 ORTHO05D000639 9.4e-19 96.7 86 64.0
Gohir.A13G011200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.6e-18 95.9 77 64.9
Lalb_Chr08g0238011 Lupinus albus HOM05D000084 ORTHO05D000639 1.6e-18 95.9 77 68.8
Duzib084G0398 Durio zibethinus HOM05D000084 ORTHO05D000639 3.6e-18 94.7 87 64.4
Phvul.002G275500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 4.7e-18 94.4 77 67.5
CANSAT01G0286 Cannabis sativa HOM05D000084 ORTHO05D000639 6.1e-18 94.0 87 64.4
Aqoxy6G00240 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 8.0e-18 93.6 85 64.7
Potri.001G088000 Populus trichocarpa HOM05D000084 ORTHO05D000639 1.0e-17 93.2 84 63.1
Potri.003G142900 Populus trichocarpa HOM05D000084 ORTHO05D000639 1.0e-17 93.2 82 63.4
QL06p045312 Quercus lobata HOM05D000084 ORTHO05D000639 1.4e-17 92.8 84 64.3
Gohir.D13G011900 Gossypium hirsutum HOM05D000084 ORTHO05D000639 2.3e-17 92.0 87 63.2
Gorai.013G013100 Gossypium raimondii HOM05D000084 ORTHO05D000639 2.3e-17 92.0 87 63.2
Glyma.08G002900 Glycine max HOM05D000084 ORTHO05D000639 4.0e-17 91.3 86 61.6
PSO528G0033 Papaver somniferum HOM05D000084 ORTHO05D000639 4.0e-17 91.3 79 65.8
Sabra01G0064400 Salix brachista HOM05D000084 ORTHO05D000639 4.0e-17 91.3 84 61.9
Glyma.04G207900 Glycine max HOM05D000084 ORTHO05D000639 6.8e-17 90.5 86 64.0
Thecc.03G302600 Theobroma cacao HOM05D000084 ORTHO05D000639 6.8e-17 90.5 85 62.4
Glyma.05G195300 Glycine max HOM05D000084 ORTHO05D000639 8.8e-17 90.1 86 60.5
PSO170G4148 Papaver somniferum HOM05D000084 ORTHO05D000639 1.2e-16 89.7 79 64.6
Ca_17000_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 1.5e-16 89.4 86 62.8
Ca_17027_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 1.5e-16 89.4 86 62.8
Sabra03G0103500 Salix brachista HOM05D000084 ORTHO05D000639 1.5e-16 89.4 82 62.2
vmacro18678 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 1.5e-16 89.4 63 73.0
ATR0665G647 Amborella trichopoda HOM05D000084 ORTHO05D000639 2.6e-16 88.6 86 65.1
Manes.09G052700 Manihot esculenta HOM05D000084 ORTHO05D000639 4.4e-16 87.8 86 65.1
Medtr3g096960 Medicago truncatula HOM05D000084 ORTHO05D000639 4.4e-16 87.8 87 64.4
TPR.G7861 Trifolium pratense HOM05D000084 ORTHO05D000639 5.7e-16 87.4 86 61.6
Lalb_Chr11g0068711 Lupinus albus HOM05D000084 ORTHO05D000639 9.8e-16 86.7 80 60.0
Hma1.2p1_0134F.1_g061600 Hydrangea macrophylla HOM05D000084 ORTHO05D024740 1.7e-15 85.9 60 68.3
Sabra15G0063800 Salix brachista HOM05D000084 ORTHO05D000639 3.7e-15 84.7 82 61.0
Sc16g0009660 Simmondsia chinensis HOM05D000084 ORTHO05D000639 3.7e-15 84.7 54 77.8
THA.LOC104818409 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 1.4e-14 82.8 87 56.3
Ah.02g117600 Amaranthus hybridus HOM05D000084 ORTHO05D000639 1.8e-14 82.4 63 61.9
Thhalv10004142m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 1.8e-14 82.4 86 53.5
COL.COLO4_10747 Corchorus olitorius HOM05D000084 ORTHO05D000639 2.4e-14 82.0 88 61.4
Hund07215 Selenicereus undatus HOM05D000084 ORTHO05D000639 3.1e-14 81.6 63 65.1
AL8G40730 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 4.1e-14 81.3 86 54.7
Psat5g058480 Pisum sativum HOM05D000084 ORTHO05D000639 4.1e-14 81.3 86 58.1
Sp2g26700 Schrenkiella parvula HOM05D000084 ORTHO05D000639 9.1e-14 80.1 88 56.8
Carub.0008s2437 Capsella rubella HOM05D000084 ORTHO05D000639 1.6e-13 79.3 86 53.5
unitig_60.g25591 Utricularia gibba HOM05D000084 ORTHO05D000639 2.0e-13 79.0 63 61.9
CARHR277490 Cardamine hirsuta HOM05D000084 ORTHO05D000639 7.7e-13 77.0 86 52.3
Sabra15G0056100 Salix brachista HOM05D000084 ORTHO05D000639 7.7e-13 77.0 74 59.5
HPP92_014416 Vanilla planifolia HOM05D000084 ORTHO05D000639 7.7e-13 77.0 88 59.1
HPP92_014422 Vanilla planifolia HOM05D000084 ORTHO05D000639 7.7e-13 77.0 88 59.1
Os10g0580300 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D000639 3.8e-12 74.7 82 59.8
A09p08370 Brassica napus HOM05D000084 ORTHO05D000639 6.6e-12 73.9 87 55.2
BraA09t36486Z Brassica rapa HOM05D000084 ORTHO05D000639 6.6e-12 73.9 87 55.2
Lsat_1_v5_gn_5_68981 Lactuca sativa HOM05D000084 ORTHO05D000639 6.6e-12 73.9 91 57.1
AT5G63610 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 8.6e-12 73.6 87 52.9
BcaC04g23342 Brassica carinata HOM05D000084 ORTHO05D000639 1.5e-11 72.8 87 54.0
C09p09450 Brassica napus HOM05D000084 ORTHO05D000639 1.5e-11 72.8 87 54.0
BolC9t53857H Brassica oleracea HOM05D000084 ORTHO05D000639 1.5e-11 72.8 87 54.0
arahy.Tifrunner.gnm1.ann1.2JWH31 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.9e-11 72.4 63 68.3
arahy.Tifrunner.gnm1.ann1.LW25T7 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.9e-11 72.4 63 68.3
AUR62006902 Chenopodium quinoa HOM05D000084 ORTHO05D000639 3.3e-11 71.6 63 58.7
Aa31LG1G18320 Aethionema arabicum HOM05D000084 ORTHO05D000639 9.5e-11 70.1 86 50.0
BcaB04g19936 Brassica carinata HOM05D000084 ORTHO05D000639 1.2e-10 69.7 82 53.7
CDE08G0532 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 4.4e-08 61.2 79 46.8
HanXRQChr15g0468931 Helianthus annuus HOM05D000084 ORTHO05D000639 5.7e-08 60.8 64 67.2
CDE06G1260 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 1.7e-07 59.3 79 45.6
VMungo0251G1725 Vigna mungo HOM05D000084 ORTHO05D000639 1.1e-06 56.6 44 65.9
MBI06_g01069_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 9.2e-06 53.5 63 52.4


User provided reference genes

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