Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g019770.1 Solanum lycopersicum HOM05D000641 ORTHO05D007351 3.6e-21 104.0 52 100.0
Solyc01g096840.3 Solanum lycopersicum HOM05D000641 ORTHO05D007351 1.1e-14 82.4 50 82.0
Sopen01g040550 Solanum pennellii HOM05D000641 ORTHO05D007351 1.1e-14 82.4 50 82.0
PGSC0003DMG400027505 Solanum tuberosum HOM05D000641 ORTHO05D007351 1.1e-14 82.4 49 85.7
Nitab4.5_0005056g0070 Nicotiana tabacum HOM05D000641 ORTHO05D007351 4.7e-13 77.0 50 78.0
Nitab4.5_0001611g0110 Nicotiana tabacum HOM05D000641 ORTHO05D007351 2.3e-12 74.7 50 76.0
CAN.G134.47 Capsicum annuum HOM05D000641 ORTHO05D007351 8.8e-12 72.8 50 76.0
Peaxi162Scf00647g00043 Petunia axillaris HOM05D000641 ORTHO05D007351 4.4e-11 70.5 50 68.0
Sc11g0005780 Simmondsia chinensis HOM05D000641 ORTHO05D007351 1.8e-09 65.1 50 62.0
SGA_v2.0_scaffold239G43988 Striga asiatica HOM05D000641 ORTHO05D007351 1.2e-08 62.4 50 62.0
Oeu031373.1 Olea europaea HOM05D000641 ORTHO05D007351 2.0e-08 61.6 50 58.0
Oeu031376.1 Olea europaea HOM05D000040 ORTHO05D007351 2.0e-08 61.6 50 58.0
CSS0037478 Camellia sinensis var. sinensis HOM05D000641 ORTHO05D007351 1.0e-07 59.3 49 59.2
MSTRG.13094 Avicennia marina HOM05D000641 ORTHO05D007351 1.3e-07 58.9 50 54.0
Haze_19388 Corylus avellana HOM05D000641 ORTHO05D007351 1.3e-07 58.9 50 60.0
Lj6g0021862 Lotus japonicus HOM05D000641 ORTHO05D007351 1.7e-07 58.5 50 62.0
Prupe.4G000100 Prunus persica HOM05D000641 ORTHO05D007351 1.7e-07 58.5 50 58.0
Gohir.D12G267300 Gossypium hirsutum HOM05D000641 ORTHO05D007351 2.2e-07 58.2 46 65.2
Gorai.008G287300 Gossypium raimondii HOM05D000641 ORTHO05D007351 2.2e-07 58.2 46 65.2
QL05p066137 Quercus lobata HOM05D000641 ORTHO05D007351 2.2e-07 58.2 50 62.0
Ca_00787_v3 Cicer arietinum L. HOM05D000641 ORTHO05D007351 3.8e-07 57.4 50 60.0
Ca_11372_v3 Cicer arietinum L. HOM05D000641 ORTHO05D007351 3.8e-07 57.4 50 60.0
Glyma.15G124000 Glycine max HOM05D000641 ORTHO05D007351 5.0e-07 57.0 50 60.0
Lalb_Chr20g0119771 Lupinus albus HOM05D000641 ORTHO05D007351 5.0e-07 57.0 50 58.0
Manes.10G068200 Manihot esculenta HOM05D000641 ORTHO05D007351 5.0e-07 57.0 50 60.0
Potri.016G000300 Populus trichocarpa HOM05D000641 ORTHO05D007351 5.0e-07 57.0 50 58.0
Rhsim13G0137700 Rhododendron simsii HOM05D000641 ORTHO05D007351 5.0e-07 57.0 49 59.2
arahy.Tifrunner.gnm1.ann1.IFG75D Arachis hypogaea HOM05D000641 ORTHO05D007351 8.5e-07 56.2 50 58.0
arahy.Tifrunner.gnm1.ann1.J86N0J Arachis hypogaea HOM05D000641 ORTHO05D007351 8.5e-07 56.2 50 58.0
MSTRG.14577 Avicennia marina HOM05D000641 ORTHO05D007351 1.1e-06 55.8 50 50.0
Cpa.g.sc27.177 Carica papaya HOM05D000641 ORTHO05D007351 1.1e-06 55.8 47 61.7
Cpa.g.sc27.181 Carica papaya HOM05D000641 ORTHO05D007351 1.1e-06 55.8 47 61.7
Gohir.A12G266850 Gossypium hirsutum HOM05D000641 ORTHO05D007351 1.1e-06 55.8 46 63.0
TWI63G1332 Tripterygium wilfordii HOM05D000641 ORTHO05D007351 1.1e-06 55.8 50 58.0
TPR.G10485 Trifolium pratense HOM05D000641 ORTHO05D007351 1.5e-06 55.5 50 58.0
Haze_07064 Corylus avellana HOM05D000641 ORTHO05D007351 1.9e-06 55.1 50 56.0
Dinv04374 Davidia involucrata HOM05D000641 ORTHO05D007351 1.9e-06 55.1 50 48.0
Glyma.09G018100 Glycine max HOM05D000641 ORTHO05D007351 2.5e-06 54.7 50 58.0
Migut.H01644 Erythranthe guttata HOM05D000641 ORTHO05D007351 3.2e-06 54.3 50 54.0
Potri.006G000400 Populus trichocarpa HOM05D000641 ORTHO05D007351 4.2e-06 53.9 50 56.0
PGR004G1652 Punica granatum HOM05D000641 ORTHO05D007351 4.2e-06 53.9 50 54.0
vmacro03582 Vaccinium macrocarpon HOM05D000641 ORTHO05D007351 4.2e-06 53.9 49 55.1
Ah.07g207340 Amaranthus hybridus HOM05D000641 ORTHO05D007351 5.5e-06 53.5 49 53.1
FAN21G1917 Fragaria x ananassa HOM05D000641 ORTHO05D007351 5.5e-06 53.5 50 52.0
FAN25G1388 Fragaria x ananassa HOM05D000641 ORTHO05D007351 5.5e-06 53.5 50 52.0
Lalb_Chr15g0088501 Lupinus albus HOM05D000641 ORTHO05D007351 5.5e-06 53.5 50 58.0
Medtr2g028220 Medicago truncatula HOM05D000641 ORTHO05D007351 5.5e-06 53.5 50 56.0
RcHm_v2.0_Chr5g0000021 Rosa chinensis HOM05D000641 ORTHO05D007351 5.5e-06 53.5 50 52.0
MD10G1342500 Malus domestica HOM05D000641 ORTHO05D007351 7.2e-06 53.1 50 52.0
Oeu025984.1 Olea europaea HOM05D000641 ORTHO05D007351 7.2e-06 53.1 50 52.0
Oeu025985.1 Olea europaea HOM05D000641 ORTHO05D007351 7.2e-06 53.1 50 52.0
Hund04725 Selenicereus undatus HOM05D000641 ORTHO05D007351 9.5e-06 52.8 50 46.0


User provided reference genes

Program Settings