Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g015840.3 Solanum lycopersicum HOM05D001092 ORTHO05D000923 3.2e-43 177.9 85 100.0
CAN.G1445.6 Capsicum annuum HOM05D001092 ORTHO05D000923 8.7e-17 90.1 87 55.2
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 4.3e-16 87.8 87 55.2
Solyc08g077500.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 9.7e-16 86.7 87 54.0
Peaxi162Scf00084g00118 Petunia axillaris HOM05D001092 ORTHO05D000923 1.6e-15 85.9 87 54.0
PGSC0003DMG400029806 Solanum tuberosum HOM05D001092 ORTHO05D000923 1.4e-14 82.8 87 54.0
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 1.5e-13 79.3 87 48.3
Rhsim11G0008400 Rhododendron simsii HOM05D001092 ORTHO05D000923 3.4e-13 78.2 93 43.0
Lj2A251G48 Lonicera japonica HOM05D001092 ORTHO05D000923 1.0e-12 76.6 92 44.6
QL12p007950 Quercus lobata HOM05D001092 ORTHO05D000923 1.0e-12 76.6 87 46.0
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.9e-12 75.1 102 42.2
Gohir.D08G181600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.9e-12 75.1 102 42.2
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 2.9e-12 75.1 102 42.2
GSVIVG01013270001 Vitis vinifera HOM05D001092 ORTHO05D000923 3.8e-12 74.7 87 43.7
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 8.5e-12 73.6 87 42.5
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 8.5e-12 73.6 102 42.2
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 1.1e-11 73.2 87 42.5
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 1.4e-11 72.8 87 41.4
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 1.9e-11 72.4 87 41.4
Gohir.A03G003300 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.5e-11 72.0 100 41.0
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 2.5e-11 72.0 87 42.5
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 4.2e-11 71.2 87 40.2
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 4.2e-11 71.2 87 42.5
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 5.5e-11 70.9 87 41.4
Oeu007576.1 Olea europaea HOM05D001092 ORTHO05D000923 5.5e-11 70.9 86 43.0
CiPaw.12G058300 Carya illinoinensis HOM05D001092 ORTHO05D000923 9.4e-11 70.1 87 42.5
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 1.2e-10 69.7 87 41.4
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.6e-10 69.3 87 40.2
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.6e-10 69.3 102 39.2
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.6e-10 69.3 102 39.2
MBI04_g20743_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 1.6e-10 69.3 87 41.4
MBI14_g25463_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 1.6e-10 69.3 87 44.8
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 1.6e-10 69.3 87 39.1
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 1.6e-10 69.3 87 42.5
SGA_v2.0_scaffold20G09243 Striga asiatica HOM05D001092 ORTHO05D000923 1.6e-10 69.3 86 44.2
Cpa.g.sc98.46 Carica papaya HOM05D001092 ORTHO05D000923 2.7e-10 68.6 87 39.1
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 2.7e-10 68.6 87 40.2
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.7e-10 68.6 87 40.2
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 3.6e-10 68.2 87 41.4
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 3.6e-10 68.2 87 41.4
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 4.6e-10 67.8 87 41.4
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 6.1e-10 67.4 87 41.4
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 7.9e-10 67.0 86 40.7
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 7.9e-10 67.0 87 40.2
Haze_08330 Corylus avellana HOM05D001092 ORTHO05D000923 7.9e-10 67.0 87 41.4
Migut.E00810 Erythranthe guttata HOM05D001092 ORTHO05D000923 7.9e-10 67.0 87 39.1
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 7.9e-10 67.0 87 37.9
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.4e-09 66.2 87 37.9
Sc07g0009000 Simmondsia chinensis HOM05D001092 ORTHO05D000923 1.8e-09 65.9 87 39.1
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 2.3e-09 65.5 87 42.5
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 2.3e-09 65.5 87 41.4
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 2.3e-09 65.5 87 40.2
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 3.0e-09 65.1 102 37.3
Psat2g175240 Pisum sativum HOM05D001092 ORTHO05D000923 3.0e-09 65.1 87 37.9
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 3.9e-09 64.7 87 37.9
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 3.9e-09 64.7 87 37.9
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 5.1e-09 64.3 102 36.3
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 1.1e-08 63.2 87 39.1
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 1.5e-08 62.8 102 35.3
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 1.5e-08 62.8 102 35.3
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 1.5e-08 62.8 87 36.8
AUR62007201 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.9e-08 62.4 87 36.8
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.9e-08 62.4 87 36.8
ClCG09G012520 Citrullus lanatus HOM05D001092 ORTHO05D000923 1.9e-08 62.4 102 35.3
unitig_21.g20375 Utricularia gibba HOM05D001092 ORTHO05D000923 2.5e-08 62.0 87 35.6
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 3.3e-08 61.6 102 35.3
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 3.3e-08 61.6 102 34.3
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 3.3e-08 61.6 102 34.3
Ah.12g053800 Amaranthus hybridus HOM05D001092 ORTHO05D000923 4.3e-08 61.2 102 35.3
Phvul.002G003000 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 4.3e-08 61.2 87 36.8
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 5.7e-08 60.8 102 34.3
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 7.4e-08 60.5 103 36.9
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 7.4e-08 60.5 103 36.9
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 9.7e-08 60.1 87 37.9
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 9.7e-08 60.1 103 35.9
CsaV3_3G049680 Cucumis sativus L. HOM05D001092 ORTHO05D000923 9.7e-08 60.1 102 34.3
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 1.3e-07 59.7 87 37.9
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 1.7e-07 59.3 102 34.3
VMungo1215G1951 Vigna mungo HOM05D001092 ORTHO05D000923 1.7e-07 59.3 102 36.3
AT4G17140 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 2.2e-07 58.9 87 36.8
CARHR223710 Cardamine hirsuta HOM05D001092 ORTHO05D000923 2.2e-07 58.9 87 36.8
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 2.8e-07 58.5 87 37.9
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 2.8e-07 58.5 102 33.3
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 2.8e-07 58.5 87 37.9
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 3.7e-07 58.2 87 35.6
CDE02G4159 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 6.3e-07 57.4 109 33.9


User provided reference genes

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