Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 0.0e+00 1616.7 818 100.0
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 0.0e+00 1592.0 818 98.4
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 0.0e+00 1288.9 829 79.6
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 0.0e+00 1131.7 834 72.7
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.8e-292 1007.3 817 66.8
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.2e-274 949.1 834 60.3
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 5.1e-271 937.9 834 60.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 4.9e-266 921.4 833 59.3
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-256 889.0 823 58.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-254 883.6 866 57.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 4.8e-253 878.2 817 59.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 9.3e-233 810.8 837 54.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.8e-221 772.7 795 54.2
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.9e-218 762.7 834 51.7
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 5.7e-214 748.4 790 52.2
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.6e-206 723.0 807 49.3
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 9.1e-204 714.5 829 49.7
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.9e-201 706.8 831 52.2
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 8.8e-199 698.0 865 48.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 4.4e-198 695.7 821 48.1
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 5.7e-198 695.3 819 48.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.4e-196 690.6 821 48.4
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-185 653.7 849 46.3
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 8.0e-184 648.3 834 45.8
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 5.7e-182 642.1 862 45.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 8.3e-181 638.3 783 47.4
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.2e-180 634.8 811 46.2
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 9.8e-174 614.8 798 45.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.7e-173 612.8 765 47.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.6e-170 602.1 859 42.1
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.6e-166 590.1 786 44.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 8.3e-165 585.1 825 42.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.4e-164 584.3 795 42.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.9e-164 583.9 839 41.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.6e-163 580.9 839 40.6
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.5e-163 579.7 839 40.5
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 7.8e-163 578.6 843 42.0
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.1e-161 574.7 814 43.1
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.3e-161 572.8 839 40.9
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.1e-160 568.5 839 42.6
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 4.4e-158 562.8 852 42.4
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 3.7e-157 559.7 831 41.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.9e-157 559.3 806 40.7
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 9.2e-156 555.1 820 41.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.0e-154 551.6 850 40.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.0e-154 550.1 727 46.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.5e-153 547.7 823 40.6
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.6e-152 544.3 863 40.4
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.1e-152 543.9 832 39.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.1e-152 543.9 814 40.8
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 8.1e-152 542.0 813 41.2
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.4e-151 541.2 828 40.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 3.1e-151 540.0 811 40.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 8.9e-151 538.5 820 40.6
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.4e-150 536.6 834 39.7
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 5.8e-150 535.8 895 38.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.8e-150 535.8 803 40.8
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 2.3e-146 523.9 815 39.4
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.0e-146 523.5 833 39.4
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.3e-145 520.0 803 40.8
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.1e-144 517.3 814 40.0
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.4e-143 513.8 813 39.9
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.1e-143 513.5 848 38.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 6.9e-143 512.3 797 39.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.2e-142 511.5 746 44.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.0e-142 510.8 797 39.6
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.4e-142 510.0 805 40.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 3.8e-141 506.5 831 38.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 8.4e-141 505.4 1007 34.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.2e-140 503.1 831 38.6
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.8e-139 498.8 829 37.4
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.3e-136 491.5 828 37.9
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.6e-134 483.8 870 36.3
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 7.6e-134 482.3 934 35.9
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.4e-132 478.0 933 34.9
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.2e-132 476.9 853 38.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.3e-132 475.3 993 33.1
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.5e-131 473.4 835 38.3
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.5e-129 467.2 854 37.7
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 1.3e-128 464.9 807 36.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-127 460.7 927 35.1
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 4.0e-127 459.9 835 36.6
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.6e-126 457.2 790 36.5
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 8.4e-125 452.2 923 34.9
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.8e-120 436.4 806 34.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 9.0e-119 432.2 841 34.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.2e-116 423.7 820 34.8
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 4.2e-116 423.3 809 35.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 4.6e-115 419.9 834 33.7
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.0e-114 417.2 978 32.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.1e-114 416.4 557 42.9
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.5e-113 414.1 785 34.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.3e-112 411.8 829 34.1
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.2e-110 405.2 806 34.6
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 9.4e-108 395.6 621 43.3
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 4.6e-107 393.3 778 33.8
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.5e-105 388.3 658 36.2
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.0e-90 339.0 874 32.4
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.5e-86 323.6 677 36.2
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 7.7e-86 322.8 616 36.2
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.9e-85 320.9 482 39.0
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.0e-85 320.1 731 33.5
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 5.0e-85 320.1 883 28.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.0e-82 312.4 642 34.0
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 5.3e-79 300.1 486 38.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.2e-78 298.9 483 38.5
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.7e-78 297.7 484 39.5
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.9e-77 294.3 566 35.0
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.9e-77 294.3 791 31.1
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.2e-76 290.8 663 33.2
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.7e-75 287.0 482 37.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.4e-74 285.4 482 37.1
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.8e-74 282.7 488 37.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.5e-73 282.0 411 42.8
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-72 277.7 480 38.1
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-71 275.8 494 35.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 4.1e-71 273.9 440 38.6
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 4.1e-71 273.9 440 38.6
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.9e-69 267.7 779 30.4
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 6.6e-69 266.5 781 27.8
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 4.7e-67 260.4 461 36.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 6.1e-67 260.0 439 39.4
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 6.8e-66 256.5 503 34.0
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 5.7e-65 253.4 635 31.5
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 7.5e-65 253.1 442 35.7
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 9.8e-65 252.7 835 27.1
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-64 251.1 633 31.4
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 2.8e-64 251.1 644 31.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 9.2e-63 246.1 630 31.3
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.7e-62 244.6 348 40.2
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 7.8e-62 243.0 293 48.5
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.0e-61 242.7 411 35.3
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-60 239.2 494 35.0
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.1e-60 239.2 814 26.9
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 3.3e-60 237.7 136 91.9
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.3e-60 237.3 829 26.3
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.5e-60 236.1 661 32.2
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 9.5e-60 236.1 651 30.0
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.6e-59 235.3 651 30.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.2e-57 229.2 451 36.6
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.8e-57 226.9 673 31.4
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 4.0e-50 204.1 624 31.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.4e-48 196.8 470 31.3
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.8e-43 181.4 490 27.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.6e-41 174.9 279 41.2
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.1e-37 160.6 191 49.7
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.1e-37 160.6 826 23.7
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 7.6e-33 146.7 105 61.0
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 4.9e-32 144.1 381 33.3
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 2.4e-31 141.7 448 25.7
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 5.4e-31 140.6 182 45.1
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.1e-28 132.9 100 57.0
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 7.3e-28 130.2 718 22.7
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.4e-18 98.6 187 29.4
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.1e-18 98.2 100 47.0
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.9e-13 81.3 83 50.6
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 4.3e-12 77.8 103 48.5
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.8e-11 74.3 77 40.3
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-10 72.4 81 40.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.2e-09 69.7 120 31.7
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.8e-08 64.7 49 65.3
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-07 60.5 64 39.1
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 2.7e-06 58.5 64 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 6.0e-06 57.4 428 21.7


User provided reference genes

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