Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 0.0e+00 1434.9 723 100.0
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 0.0e+00 1414.8 723 98.6
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 0.0e+00 1201.4 726 83.6
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 8.9e-296 1020.0 726 72.3
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 1.9e-274 949.1 579 84.6
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 5.9e-247 857.8 568 77.3
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.0e-215 753.1 738 55.8
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 3.5e-215 752.3 736 56.8
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 1.2e-212 743.8 739 54.7
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.4e-211 740.3 731 55.8
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 4.0e-211 738.8 722 56.0
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.7e-209 733.4 729 53.9
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.0e-206 722.6 737 54.3
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 3.9e-206 722.2 734 52.6
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 3.1e-203 712.6 680 56.6
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 6.8e-203 711.4 737 52.4
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 3.7e-201 705.7 739 52.1
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 3.7e-201 705.7 742 52.6
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 8.6e-198 694.5 726 52.2
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.9e-197 693.3 737 52.1
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 9.5e-197 691.0 737 52.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.6e-196 689.1 726 51.9
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.5e-194 683.7 736 51.5
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 4.4e-194 682.2 731 49.9
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 7.5e-194 681.4 731 51.6
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 3.7e-193 679.1 730 51.8
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 3.7e-193 679.1 730 51.8
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 3.7e-193 679.1 727 52.3
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 6.4e-193 678.3 667 54.3
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.4e-192 677.2 727 51.7
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.9e-192 676.8 730 51.0
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 3.2e-192 676.0 728 51.9
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 1.2e-191 674.1 736 51.8
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.0e-190 671.0 727 51.7
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.3e-190 669.8 752 49.9
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 8.6e-190 667.9 693 52.2
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 1.5e-189 667.2 807 48.6
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.9e-189 666.8 734 51.9
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 9.5e-189 664.5 729 50.3
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.8e-187 660.2 726 51.5
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 4.0e-187 659.1 354 93.5
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 2.6e-186 656.4 730 50.7
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 3.4e-186 656.0 731 50.8
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 9.9e-186 654.4 738 49.6
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 1.4e-184 650.6 767 49.2
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 4.6e-183 645.6 733 47.7
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.0e-182 644.4 739 48.6
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 6.6e-182 641.7 749 48.1
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.5e-181 640.6 741 48.3
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.9e-181 640.2 734 49.0
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.1e-179 634.4 726 48.3
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.8e-179 633.6 776 48.6
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 5.8e-178 628.6 731 47.7
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.9e-176 623.6 329 95.1
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 2.4e-176 623.2 737 46.4
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.6e-175 620.5 729 47.1
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.6e-175 620.5 733 47.9
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 3.5e-175 619.4 727 47.0
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 3.5e-175 619.4 655 51.1
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 2.3e-174 616.7 780 45.6
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 6.6e-174 615.1 739 46.4
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.1e-173 614.4 739 46.5
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.9e-173 613.6 812 44.7
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 2.5e-173 613.2 784 45.9
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 4.3e-173 612.5 727 46.5
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 8.1e-172 608.2 724 46.4
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.9e-169 599.7 730 48.2
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 2.4e-168 596.7 772 44.3
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 2.4e-168 596.7 726 45.3
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.6e-167 594.0 770 44.2
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.8e-166 590.5 706 46.5
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.4e-163 580.9 682 49.4
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 3.1e-163 579.7 706 46.3
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 4.0e-163 579.3 699 46.4
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 2.6e-162 576.6 696 47.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.3e-161 574.3 664 46.2
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 8.2e-156 555.1 728 43.8
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 9.0e-155 551.6 748 41.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.2e-154 551.2 601 50.4
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 5.8e-154 548.9 734 41.7
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.7e-153 547.4 672 45.2
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.3e-149 532.7 714 43.1
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 4.5e-146 522.7 736 41.4
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 3.1e-131 473.4 682 41.5
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 6.7e-126 455.7 565 45.3
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 7.7e-122 442.2 731 37.2
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 7.2e-120 435.6 535 46.0
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 8.8e-118 428.7 507 47.7
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 4.1e-115 419.9 444 52.3
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.5e-112 410.6 554 42.2
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 4.7e-111 406.4 440 51.4
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.8e-108 397.1 590 41.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 6.5e-105 386.0 449 48.8
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.0e-98 364.4 390 50.8
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 3.5e-98 363.6 343 53.9
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 2.5e-96 357.5 418 47.8
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.1e-88 332.0 378 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.5e-88 331.6 696 31.3
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.3e-88 330.5 289 59.9
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 4.7e-87 326.6 806 29.5
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 6.8e-86 322.8 380 46.3
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.1e-82 311.2 329 49.8
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 3.1e-78 297.4 500 39.6
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.0e-77 294.7 867 26.9
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 2.2e-76 291.2 157 91.1
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 2.2e-76 291.2 304 50.0
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.2e-75 287.3 697 28.0
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 8.1e-71 272.7 246 64.2
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.7e-65 255.0 232 57.3
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 9.6e-64 249.2 198 61.6
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.1e-63 248.1 894 24.7
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.5e-61 241.9 166 75.9
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 4.9e-60 236.9 276 48.9
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.9e-60 236.9 134 86.6
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 6.4e-60 236.5 243 52.3
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 9.0e-54 216.1 272 47.8
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.6e-53 214.5 160 65.6
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.9e-49 200.7 160 60.6
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 4.8e-47 193.7 316 39.9
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 4.8e-47 193.7 297 42.1
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 3.2e-43 181.0 239 43.5
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 2.3e-33 148.3 194 46.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.3e-30 137.1 108 57.4
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 8.2e-23 113.2 98 59.2
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 1.8e-22 112.1 166 38.0
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 4.5e-13 80.9 338 27.5
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.2e-07 62.0 35 77.1
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 5.3e-06 57.4 180 28.9


User provided reference genes

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